Eukaryotic transcriptional dynamics: from single molecules to cell populations
Transcriptional regulation is achieved through combinatorial interactions between regulatory
elements in the human genome and a vast range of factors that modulate the recruitment …
elements in the human genome and a vast range of factors that modulate the recruitment …
Visualizing transcription factor dynamics in living cells
Z Liu, R Tjian - Journal of Cell Biology, 2018 - rupress.org
The assembly of sequence-specific enhancer-binding transcription factors (TFs) at cis-
regulatory elements in the genome has long been regarded as the fundamental mechanism …
regulatory elements in the genome has long been regarded as the fundamental mechanism …
An intrinsically disordered region-mediated confinement state contributes to the dynamics and function of transcription factors
Transcription factors (TFs) regulate gene expression by binding to specific consensus motifs
within the local chromatin context. The mechanisms by which TFs navigate the nuclear …
within the local chromatin context. The mechanisms by which TFs navigate the nuclear …
A benchmark for chromatin binding measurements in live cells
Live-cell measurement of protein binding to chromatin allows probing cellular biochemistry
in physiological conditions, which are difficult to mimic in vitro. However, different studies …
in physiological conditions, which are difficult to mimic in vitro. However, different studies …
An orange fluorescent protein with a large Stokes shift for single-excitation multicolor FCCS and FRET imaging
DM Shcherbakova, MA Hink, L Joosen… - Journal of the …, 2012 - ACS Publications
Multicolor imaging based on genetically encoded fluorescent proteins (FPs) is a powerful
approach to study several dynamic processes in a live cell. We report a monomeric orange …
approach to study several dynamic processes in a live cell. We report a monomeric orange …
DNase footprint signatures are dictated by factor dynamics and DNA sequence
MH Sung, MJ Guertin, S Baek, GL Hager - Molecular cell, 2014 - cell.com
Genomic footprinting has emerged as an unbiased discovery method for transcription factor
(TF) occupancy at cognate DNA in vivo. A basic premise of footprinting is that sequence …
(TF) occupancy at cognate DNA in vivo. A basic premise of footprinting is that sequence …
Dependence of diffusion in Escherichia coli cytoplasm on protein size, environmental conditions, and cell growth
Inside prokaryotic cells, passive translational diffusion typically limits the rates with which
cytoplasmic proteins can reach their locations. Diffusion is thus fundamental to most cellular …
cytoplasmic proteins can reach their locations. Diffusion is thus fundamental to most cellular …
A guide to changing paradigms of glucocorticoid receptor function—a model system for genome regulation and physiology
S Vettorazzi, D Nalbantoglu, JCM Gebhardt… - The FEBS …, 2022 - Wiley Online Library
The glucocorticoid receptor (GR) is a bona fide ligand‐regulated transcription factor. Cloned
in the 80s, the GR has become one of the best‐studied and clinically most relevant members …
in the 80s, the GR has become one of the best‐studied and clinically most relevant members …
Quantitative theory for the diffusive dynamics of liquid condensates
Key processes of biological condensates are diffusion and material exchange with their
environment. Experimentally, diffusive dynamics are typically probed via fluorescent labels …
environment. Experimentally, diffusive dynamics are typically probed via fluorescent labels …
Fluorescence recovery after photobleaching in colloidal science: introduction and application
AA Moud - ACS Biomaterials Science & Engineering, 2022 - ACS Publications
FRAP (fluorescence recovery after photo bleaching) is a method for determining diffusion in
material science. In industrial applications such as medications, foods, Medtech, hygiene …
material science. In industrial applications such as medications, foods, Medtech, hygiene …