CellChat for systematic analysis of cell–cell communication from single-cell transcriptomics
Recent advances in single-cell sequencing technologies offer an opportunity to explore cell–
cell communication in tissues systematically and with reduced bias. A key challenge is …
cell communication in tissues systematically and with reduced bias. A key challenge is …
The diversification of methods for studying cell–cell interactions and communication
No cell lives in a vacuum, and the molecular interactions between cells define most
phenotypes. Transcriptomics provides rich information to infer cell–cell interactions and …
phenotypes. Transcriptomics provides rich information to infer cell–cell interactions and …
LIANA+ provides an all-in-one framework for cell–cell communication inference
The growing availability of single-cell and spatially resolved transcriptomics has led to the
development of many approaches to infer cell–cell communication, each capturing only a …
development of many approaches to infer cell–cell communication, each capturing only a …
Bispecific dendritic-T cell engager potentiates anti-tumor immunity
Immune checkpoint inhibition treatment using aPD-1 monoclonal antibodies is a promising
cancer immunotherapy approach. However, its effect on tumor immunity is narrow, as most …
cancer immunotherapy approach. However, its effect on tumor immunity is narrow, as most …
Inferring pattern-driving intercellular flows from single-cell and spatial transcriptomics
From single-cell RNA-sequencing (scRNA-seq) and spatial transcriptomics (ST), one can
extract high-dimensional gene expression patterns that can be described by intercellular …
extract high-dimensional gene expression patterns that can be described by intercellular …
Adipose-tissue regulatory T cells are a consortium of subtypes that evolves with age and diet
AR Muñoz-Rojas, G Wang… - Proceedings of the …, 2024 - National Acad Sciences
Foxp3+ CD4+ regulatory T (Treg) cells found within tissues regulate local immunity,
inflammation, and homeostasis. Tregs in epididymal visceral adipose tissue (eVAT) are …
inflammation, and homeostasis. Tregs in epididymal visceral adipose tissue (eVAT) are …
A longitudinal single-cell atlas of anti-tumour necrosis factor treatment in inflammatory bowel disease
T Thomas, M Friedrich, C Rich-Griffin, M Pohin… - Nature …, 2024 - nature.com
Precision medicine in immune-mediated inflammatory diseases (IMIDs) requires a cellular
understanding of treatment response. We describe a therapeutic atlas for Crohn's disease …
understanding of treatment response. We describe a therapeutic atlas for Crohn's disease …
Integrating single-cell multi-omics and prior biological knowledge for a functional characterization of the immune system
The immune system comprises diverse specialized cell types that cooperate to defend the
host against a wide range of pathogenic threats. Recent advancements in single-cell and …
host against a wide range of pathogenic threats. Recent advancements in single-cell and …
Polyclonal-to-monoclonal transition in colorectal precancerous evolution
Unravelling the origin and evolution of precancerous lesions is crucial for effectively
preventing malignant transformation, yet our current knowledge remains limited 1, 2, 3. Here …
preventing malignant transformation, yet our current knowledge remains limited 1, 2, 3. Here …
[HTML][HTML] CD4+ T cells re-wire granuloma cellularity and regulatory networks to promote immunomodulation following Mtb reinfection
JD Bromley, SKC Ganchua, SK Nyquist, P Maiello… - Immunity, 2024 - cell.com
Immunological priming—in the context of either prior infection or vaccination—elicits
protective responses against subsequent Mycobacterium tuberculosis (Mtb) infection …
protective responses against subsequent Mycobacterium tuberculosis (Mtb) infection …