Ribosome profiling, which involves the deep sequencing of ribosome-protected mRNA
fragments, is a powerful tool for globally monitoring translation in vivo. The method has …

Cellular states are determined by differential expression of the cell's proteins. The
relationship between protein and mRNA expression levels informs about the combined …

Light regulates chlorophyll homeostasis and photosynthesis via various molecular
mechanisms in plants. The light regulation of transcription and protein stability of nuclear …

Cross-kingdom small RNA trafficking between hosts and microbes modulates gene
expression in the interacting partners during infection. However, whether other RNAs are …

Agrobacterium rhizogenes (or Rhizobium rhizogenes) is able to transform plant genomes
and induce the production of hairy roots. We describe the use of A. rhizogenes in tomato …

Translational regulation contributes to plasticity in metabolism and growth that enables
plants to survive in a dynamic environment. Here, we used the precise mapping of ribosome …

The cellular heterogeneity of the brain confounds efforts to elucidate the biological
properties of distinct neuronal populations. Using bacterial artificial chromosome (BAC) …

Multicellular organs are composed of distinct cell types with unique assemblages of
translated mRNAs. Here, ribosome-associated mRNAs were immunopurified from specific …

Eukaryotic transcriptomes contain a major non–protein-coding component that includes
precursors of small RNAs as well as long noncoding RNA (lncRNAs). Here, we utilized the …

Changes in gene expression are at the core of most biological processes, from cell
differentiation to organ development, including the adaptation of the whole organism to the …