Clinical applications of mass spectrometry‐based proteomics in cancer: Where are we?

EL Boys, J Liu, PJ Robinson, RR Reddel - Proteomics, 2023 - Wiley Online Library
Tumor tissue processing methodologies in combination with data‐independent acquisition
mass spectrometry (DIA‐MS) have emerged that can comprehensively analyze the …

[HTML][HTML] Pan-cancer proteomic map of 949 human cell lines

E Gonçalves, RC Poulos, Z Cai, S Barthorpe… - Cancer Cell, 2022 - cell.com
The proteome provides unique insights into disease biology beyond the genome and
transcriptome. A lack of large proteomic datasets has restricted the identification of new …

Mass spectrometry-based draft of the mouse proteome

P Giansanti, P Samaras, Y Bian, C Meng, A Coluccio… - Nature …, 2022 - nature.com
The laboratory mouse ranks among the most important experimental systems for biomedical
research and molecular reference maps of such models are essential informational tools …

CurveCurator: a recalibrated F-statistic to assess, classify, and explore significance of dose–response curves

FP Bayer, M Gander, B Kuster, M The - Nature Communications, 2023 - nature.com
Dose-response curves are key metrics in pharmacology and biology to assess phenotypic or
molecular actions of bioactive compounds in a quantitative fashion. Yet, it is often unclear …

A protein expression atlas on tissue samples and cell lines from cancer patients provides insights into tumor heterogeneity and dependencies

J Li, W Liu, K Mojumdar, H Kim, Z Zhou, Z Ju… - Nature Cancer, 2024 - nature.com
Abstract The Cancer Genome Atlas (TCGA) and the Cancer Cell Line Encyclopedia (CCLE)
are foundational resources in cancer research, providing extensive molecular and …

Instrumentation at the leading edge of proteomics

TM Peters-Clarke, JJ Coon, NM Riley - Analytical Chemistry, 2024 - ACS Publications
The proteome, or collection of proteoforms expressed in a biological system, is dynamic and
heterogeneous. As our appreciation for the complexity of the proteome has evolved, so have …

Illuminating phenotypic drug responses of sarcoma cells to kinase inhibitors by phosphoproteomics

CY Lee, M The, C Meng, FP Bayer… - Molecular Systems …, 2024 - embopress.org
Kinase inhibitors (KIs) are important cancer drugs but often feature polypharmacology that is
molecularly not understood. This disconnect is particularly apparent in cancer entities such …

[HTML][HTML] Recent advances in kinase signaling network profiling by mass spectrometry

G Franciosa, M Locard-Paulet, LJ Jensen… - Current Opinion in …, 2023 - Elsevier
Mass spectrometry-based phosphoproteomics is currently the leading methodology for the
study of global kinase signaling. The scientific community is continuously releasing …

Phosphoproteomic profiling of T cell acute lymphoblastic leukemia reveals targetable kinases and combination treatment strategies

V Cordo', MT Meijer, R Hagelaar… - Nature …, 2022 - nature.com
Protein kinase inhibitors are amongst the most successful cancer treatments, but targetable
kinases activated by genomic abnormalities are rare in T cell acute lymphoblastic leukemia …

Phosphoproteomic analysis of metformin signaling in colorectal cancer cells elucidates mechanism of action and potential therapeutic opportunities

B Salovska, E Gao, S Müller‐Dott, W Li… - Clinical and …, 2023 - Wiley Online Library
Background The biguanide drug metformin is a safe and widely prescribed drug for type 2
diabetes. Interestingly, hundreds of clinical trials have been set to evaluate the potential role …