Clinical applications of mass spectrometry‐based proteomics in cancer: Where are we?
EL Boys, J Liu, PJ Robinson, RR Reddel - Proteomics, 2023 - Wiley Online Library
Tumor tissue processing methodologies in combination with data‐independent acquisition
mass spectrometry (DIA‐MS) have emerged that can comprehensively analyze the …
mass spectrometry (DIA‐MS) have emerged that can comprehensively analyze the …
[HTML][HTML] Pan-cancer proteomic map of 949 human cell lines
The proteome provides unique insights into disease biology beyond the genome and
transcriptome. A lack of large proteomic datasets has restricted the identification of new …
transcriptome. A lack of large proteomic datasets has restricted the identification of new …
Mass spectrometry-based draft of the mouse proteome
The laboratory mouse ranks among the most important experimental systems for biomedical
research and molecular reference maps of such models are essential informational tools …
research and molecular reference maps of such models are essential informational tools …
CurveCurator: a recalibrated F-statistic to assess, classify, and explore significance of dose–response curves
Dose-response curves are key metrics in pharmacology and biology to assess phenotypic or
molecular actions of bioactive compounds in a quantitative fashion. Yet, it is often unclear …
molecular actions of bioactive compounds in a quantitative fashion. Yet, it is often unclear …
A protein expression atlas on tissue samples and cell lines from cancer patients provides insights into tumor heterogeneity and dependencies
J Li, W Liu, K Mojumdar, H Kim, Z Zhou, Z Ju… - Nature Cancer, 2024 - nature.com
Abstract The Cancer Genome Atlas (TCGA) and the Cancer Cell Line Encyclopedia (CCLE)
are foundational resources in cancer research, providing extensive molecular and …
are foundational resources in cancer research, providing extensive molecular and …
Instrumentation at the leading edge of proteomics
The proteome, or collection of proteoforms expressed in a biological system, is dynamic and
heterogeneous. As our appreciation for the complexity of the proteome has evolved, so have …
heterogeneous. As our appreciation for the complexity of the proteome has evolved, so have …
Illuminating phenotypic drug responses of sarcoma cells to kinase inhibitors by phosphoproteomics
Kinase inhibitors (KIs) are important cancer drugs but often feature polypharmacology that is
molecularly not understood. This disconnect is particularly apparent in cancer entities such …
molecularly not understood. This disconnect is particularly apparent in cancer entities such …
[HTML][HTML] Recent advances in kinase signaling network profiling by mass spectrometry
Mass spectrometry-based phosphoproteomics is currently the leading methodology for the
study of global kinase signaling. The scientific community is continuously releasing …
study of global kinase signaling. The scientific community is continuously releasing …
Phosphoproteomic profiling of T cell acute lymphoblastic leukemia reveals targetable kinases and combination treatment strategies
V Cordo', MT Meijer, R Hagelaar… - Nature …, 2022 - nature.com
Protein kinase inhibitors are amongst the most successful cancer treatments, but targetable
kinases activated by genomic abnormalities are rare in T cell acute lymphoblastic leukemia …
kinases activated by genomic abnormalities are rare in T cell acute lymphoblastic leukemia …
Phosphoproteomic analysis of metformin signaling in colorectal cancer cells elucidates mechanism of action and potential therapeutic opportunities
Background The biguanide drug metformin is a safe and widely prescribed drug for type 2
diabetes. Interestingly, hundreds of clinical trials have been set to evaluate the potential role …
diabetes. Interestingly, hundreds of clinical trials have been set to evaluate the potential role …