How do lncRNAs regulate transcription?

Y Long, X Wang, DT Youmans, TR Cech - Science advances, 2017 - science.org
It has recently become apparent that RNA, itself the product of transcription, is a major
regulator of the transcriptional process. In particular, long noncoding RNAs (lncRNAs) …

The interplay of epigenetic marks during stem cell differentiation and development

Y Atlasi, HG Stunnenberg - Nature Reviews Genetics, 2017 - nature.com
Chromatin, the template for epigenetic regulation, is a highly dynamic entity that is constantly
reshaped during early development and differentiation. Epigenetic modification of chromatin …

Capture of mouse and human stem cells with features of formative pluripotency

M Kinoshita, M Barber, W Mansfield, Y Cui, D Spindlow… - Cell stem cell, 2021 - cell.com
Pluripotent cells emerge as a naive founder population in the blastocyst, acquire capacity for
germline and soma formation, and then undergo lineage priming. Mouse embryonic stem …

Formative pluripotency: the executive phase in a developmental continuum

A Smith - Development, 2017 - journals.biologists.com
The regulative capability of single cells to give rise to all primary embryonic lineages is
termed pluripotency. Observations of fluctuating gene expression and phenotypic …

Specification and epigenetic programming of the human germ line

WWC Tang, T Kobayashi, N Irie, S Dietmann… - Nature Reviews …, 2016 - nature.com
Primordial germ cells (PGCs), the precursors of sperm and eggs, are established in
perigastrulation-stage embryos in mammals. Signals from extra-embryonic tissues induce a …

[HTML][HTML] Single-cell landscape of transcriptional heterogeneity and cell fate decisions during mouse early gastrulation

H Mohammed, I Hernando-Herraez, A Savino… - Cell reports, 2017 - cell.com
The mouse inner cell mass (ICM) segregates into the epiblast and primitive endoderm (PrE)
lineages coincident with implantation of the embryo. The epiblast subsequently undergoes …

Orphan CpG islands amplify poised enhancer regulatory activity and determine target gene responsiveness

T Pachano, V Sánchez-Gaya, T Ealo, M Mariner-Faulí… - Nature …, 2021 - nature.com
CpG islands (CGIs) represent a widespread feature of vertebrate genomes, being
associated with~ 70% of all gene promoters. CGIs control transcription initiation by …

Epigenome in early mammalian development: inheritance, reprogramming and establishment

Q Xu, W Xie - Trends in cell biology, 2018 - cell.com
Drastic epigenetic reprogramming takes place during preimplantation development, leading
to the conversion of terminally differentiated gametes to a totipotent embryo. Deficiencies in …

Dynamic epigenomic landscapes during early lineage specification in mouse embryos

Y Zhang, Y Xiang, Q Yin, Z Du, X Peng, Q Wang… - Nature …, 2018 - nature.com
In mammals, all somatic development originates from lineage segregation in early embryos.
However, the dynamics of transcriptomes and epigenomes acting in concert with initial cell …

The chromatin, topological and regulatory properties of pluripotency-associated poised enhancers are conserved in vivo

G Crispatzu, R Rehimi, T Pachano, T Bleckwehl… - Nature …, 2021 - nature.com
Poised enhancers (PEs) represent a genetically distinct set of distal regulatory elements that
control the expression of major developmental genes. Before becoming activated in …