Archaeal and eukaryotic homologs of Hfq: A structural and evolutionary perspective on Sm function

C Mura, PS Randolph, J Patterson, AE Cozen - RNA biology, 2013 - Taylor & Francis
Hfq and other Sm proteins are central in RNA metabolism, forming an evolutionarily
conserved family that plays key roles in RNA processing in organisms ranging from archaea …

The small β-barrel domain: a survey-based structural analysis

P Youkharibache, S Veretnik, Q Li, KA Stanek, C Mura… - Structure, 2019 - cell.com
The small β-barrel (SBB) is an ancient protein structural domain characterized by extremes:
it features a broad range of structural varieties, a deeply intricate evolutionary history, and it …

Known structure, unknown function: An inquiry‐based undergraduate biochemistry laboratory course

C Gray, CW Price, CT Lee, AH Dewald… - Biochemistry and …, 2015 - Wiley Online Library
Undergraduate biochemistry laboratory courses often do not provide students with an
authentic research experience, particularly when the express purpose of the laboratory is …

Hierarchical representation for PPI sites prediction

M Quadrini, S Daberdaku, C Ferrari - BMC bioinformatics, 2022 - Springer
Background Protein–protein interactions have pivotal roles in life processes, and aberrant
interactions are associated with various disorders. Interaction site identification is key for …

Exploiting structural classifications for function prediction: towards a domain grammar for protein function

BH Dessailly, OC Redfern, A Cuff, CA Orengo - Current opinion in …, 2009 - Elsevier
The ability to assign function to proteins has become a major bottleneck for comprehensively
understanding cellular mechanisms at the molecular level. Here we discuss the extent to …

The Urfold: Structural similarity just above the superfold level?

C Mura, S Veretnik, PE Bourne - Protein Science, 2019 - Wiley Online Library
We suspect that there is a level of granularity of protein structure intermediate between the
classical levels of “architecture” and “topology,” as reflected in such phenomena as …

[HTML][HTML] Does distant homology with Evf reveal a lipid binding site in Bacillus thuringiensis cytolytic toxins?

DJ Rigden - FEBS letters, 2009 - Elsevier
The Cry and Cyt classes of insecticidal toxins derived from the sporulating bacterium
Bacillus thuringiensis are valuable substitutes for synthetic pesticides in agricultural …

Protein classification based on graphical encoding and convolutional neural network

HM Wassfy, WA Shalaby, MI Dessouky… - 2023 3rd …, 2023 - ieeexplore.ieee.org
Sequence signature methods to analyze protein sequences have lately attracted the
attention of bioinformaticians and computational biologists. These methods are based on …

[PDF][PDF] La structure des protéines et son évolution

M Carpentier - 2023 - mnhn.hal.science
«L'esprit scientifique nous interdit d'avoir une opinion sur des questions que nous ne
comprenons pas, sur des questions que nous ne savons pas formuler clairement. Avant tout …

[PDF][PDF] The evolution of protein functions and networks: a family-centric approach

BH Dessailly, AJ Reid, C Yeats, JG Lees, A Cuff… - 2009 - academia.edu
The study of superfamilies of protein domains using a combination of structure, sequence
and function data provides insights into deep evolutionary history. In the present paper …