The first 100 nm inside the pre-synaptic terminal where calcium diffusion triggers vesicular release

C Guerrier, D Holcman - Frontiers in Synaptic Neuroscience, 2018 - frontiersin.org
Calcium diffusion in the thin 100 nm layer located between the plasma membrane and
docked vesicles in the pre-synaptic terminal of neuronal cells mediates vesicular fusion and …

Computational modeling of spike generation in serotonergic neurons of the dorsal raphe nucleus

HC Tuckwell, NJ Penington - Progress in neurobiology, 2014 - Elsevier
Serotonergic neurons of the dorsal raphe nucleus, with their extensive innervation of limbic
and higher brain regions and interactions with the endocrine system have important …

Modelling vesicular release at hippocampal synapses

S Nadkarni, TM Bartol, TJ Sejnowski… - PLoS computational …, 2010 - journals.plos.org
We study local calcium dynamics leading to a vesicle fusion in a stochastic, and spatially
explicit, biophysical model of the CA3-CA1 presynaptic bouton. The kinetic model for vesicle …

Variations in Ca2+ influx can alter chelator-based estimates of Ca2+ channel–synaptic vesicle coupling distance

Y Nakamura, M Reva, DA DiGregorio - Journal of Neuroscience, 2018 - Soc Neuroscience
The timing and probability of synaptic vesicle fusion from presynaptic terminals is governed
by the distance between voltage-gated Ca2+ channels (VGCCs) and Ca2+ sensors for …

A first-passage approach to diffusion-influenced reversible binding and its insights into nanoscale signaling at the presynapse

M Reva, DA DiGregorio, DS Grebenkov - Scientific reports, 2021 - nature.com
Synaptic transmission between neurons is governed by a cascade of stochastic calcium ion
reaction–diffusion events within nerve terminals leading to vesicular release of …

Short-term plasticity constrains spatial organization of a hippocampal presynaptic terminal

S Nadkarni, TM Bartol, CF Stevens… - Proceedings of the …, 2012 - National Acad Sciences
Although the CA3–CA1 synapse is critically important for learning and memory,
experimental limitations have to date prevented direct determination of the structural …

Theory of active transport in filopodia and stereocilia

PI Zhuravlev, Y Lan, MS Minakova… - Proceedings of the …, 2012 - National Acad Sciences
The biological processes in elongated organelles of living cells are often regulated by
molecular motor transport. We determined spatial distributions of motors in such organelles …

A simple, realistic stochastic model of gastric emptying

J Yokrattanasak, A De Gaetano, S Panunzi… - PloS one, 2016 - journals.plos.org
Several models of Gastric Emptying (GE) have been employed in the past to represent the
rate of delivery of stomach contents to the duodenum and jejunum. These models have all …

RIM‐binding proteins recruit BK‐channels to presynaptic release sites adjacent to voltage‐gated Ca2+‐channels

A Sclip, C Acuna, F Luo, TC Südhof - The EMBO journal, 2018 - embopress.org
The active zone of presynaptic nerve terminals organizes the neurotransmitter release
machinery, thereby enabling fast Ca2+‐triggered synaptic vesicle exocytosis. BK‐channels …

Hybrid Markov-mass action law model for cell activation by rare binding events: application to calcium induced vesicular release at neuronal synapses

C Guerrier, D Holcman - Scientific reports, 2016 - nature.com
Binding of molecules, ions or proteins to small target sites is a generic step of cell activation.
This process relies on rare stochastic events where a particle located in a large bulk has to …