Precision oncology in the age of integrative genomics
C Kumar-Sinha, AM Chinnaiyan - Nature biotechnology, 2018 - nature.com
Precision oncology applies genomic and other molecular analyses of tumor biopsies to
improve the diagnosis and treatment of cancers. In addition to identifying therapeutic …
improve the diagnosis and treatment of cancers. In addition to identifying therapeutic …
Rac1 signaling: from intestinal homeostasis to colorectal cancer metastasis
L Kotelevets, E Chastre - Cancers, 2020 - mdpi.com
The small GTPase Rac1 has been implicated in a variety of dynamic cell biological
processes, including cell proliferation, cell survival, cell-cell contacts, epithelial …
processes, including cell proliferation, cell survival, cell-cell contacts, epithelial …
Uncovering novel mutational signatures by de novo extraction with SigProfilerExtractor
Mutational signature analysis is commonly performed in cancer genomic studies. Here, we
present SigProfilerExtractor, an automated tool for de novo extraction of mutational …
present SigProfilerExtractor, an automated tool for de novo extraction of mutational …
TSGene 2.0: an updated literature-based knowledgebase for tumor suppressor genes
Tumor suppressor genes (TSGs) are a major type of gatekeeper genes in the cell growth. A
knowledgebase with the systematic collection and curation of TSGs in multiple cancer types …
knowledgebase with the systematic collection and curation of TSGs in multiple cancer types …
Whole-genome sequencing of 508 patients identifies key molecular features associated with poor prognosis in esophageal squamous cell carcinoma
Y Cui, H Chen, R Xi, H Cui, Y Zhao, E Xu, T Yan, X Lu… - Cell research, 2020 - nature.com
Esophageal squamous cell carcinoma (ESCC) is a poor-prognosis cancer type with limited
understanding of its molecular etiology. Using 508 ESCC genomes, we identified five novel …
understanding of its molecular etiology. Using 508 ESCC genomes, we identified five novel …
Dietary cholesterol promotes steatohepatitis related hepatocellular carcinoma through dysregulated metabolism and calcium signaling
The underlining mechanisms of dietary cholesterol and nonalcoholic steatohepatitis (NASH)
in contributing to hepatocellular carcinoma (HCC) remain undefined. Here we demonstrated …
in contributing to hepatocellular carcinoma (HCC) remain undefined. Here we demonstrated …
LINC00941 promotes CRC metastasis through preventing SMAD4 protein degradation and activating the TGF-β/SMAD2/3 signaling pathway
N Wu, M Jiang, H Liu, Y Chu, D Wang, J Cao… - Cell Death & …, 2021 - nature.com
Abstrict LINC00941 is a novel lncRNA that has been found to exhibit protumorigenic and
prometastatic behaviors during tumorigenesis. However, its role in metastatic CRC remains …
prometastatic behaviors during tumorigenesis. However, its role in metastatic CRC remains …
Whole-exome sequencing analyses of inflammatory bowel Disease− Associated colorectal cancers
Background & Aims A long duration of inflammatory bowel disease (IBD) increases the risk
for colorectal cancer. Mutation analysis of limited numbers of genes has indicated that …
for colorectal cancer. Mutation analysis of limited numbers of genes has indicated that …
SMAD4 Gene Mutation Renders Pancreatic Cancer Resistance to Radiotherapy through Promotion of Autophagy
F Wang, X Xia, C Yang, J Shen, J Mai, HC Kim… - Clinical Cancer …, 2018 - AACR
Purpose: Understanding the mechanism of radioresistance could help develop strategies to
improve therapeutic response of patients with PDAC. The SMAD4 gene is frequently …
improve therapeutic response of patients with PDAC. The SMAD4 gene is frequently …
Genomic Landscape Survey Identifies SRSF1 as a Key Oncodriver in Small Cell Lung Cancer
L Jiang, J Huang, BW Higgs, Z Hu, Z Xiao, X Yao… - PLoS …, 2016 - journals.plos.org
Small cell lung cancer (SCLC) is an aggressive disease with poor survival. A few
sequencing studies performed on limited number of samples have revealed potential …
sequencing studies performed on limited number of samples have revealed potential …