The diversity and distribution of endophytes across biomes, plant phylogeny and host tissues: how far have we come and where do we go from here?

JG Harrison, EA Griffin - Environmental microbiology, 2020 - Wiley Online Library
The interiors of plants are colonized by diverse microorganisms that are referred to as
endophytes. Endophytes have received much attention over the past few decades, yet many …

Current insight into traditional and modern methods in fungal diversity estimates

AK Gautam, RK Verma, S Avasthi, Sushma, Y Bohra… - Journal of Fungi, 2022 - mdpi.com
Fungi are an important and diverse component in various ecosystems. The methods to
identify different fungi are an important step in any mycological study. Classical methods of …

Standardized multi-omics of Earth's microbiomes reveals microbial and metabolite diversity

JP Shaffer, LF Nothias, LR Thompson, JG Sanders… - Nature …, 2022 - nature.com
Despite advances in sequencing, lack of standardization makes comparisons across studies
challenging and hampers insights into the structure and function of microbial communities …

GlobalFungi, a global database of fungal occurrences from high-throughput-sequencing metabarcoding studies

T Větrovský, D Morais, P Kohout, C Lepinay, C Algora… - Scientific Data, 2020 - nature.com
Fungi are key players in vital ecosystem services, spanning carbon cycling, decomposition,
symbiotic associations with cultivated and wild plants and pathogenicity. The high …

Precipitation balances deterministic and stochastic processes of bacterial community assembly in grassland soils

L Yang, D Ning, Y Yang, N He, X Li, CR Cornell… - Soil Biology and …, 2022 - Elsevier
Microbial biodiversity is crucial for maintaining ecosystem functions. As climate change
progresses at both global and regional scales, there is a need to understand microbial …

Distinct assembly mechanisms underlie similar biogeographical patterns of rare and abundant bacteria in Tibetan Plateau grassland soils

M Ji, W Kong, J Stegen, L Yue, F Wang… - Environmental …, 2020 - Wiley Online Library
Rare biosphere represents the majority of Earth's biodiversity and performs vital ecological
functions, yet little is known about its biogeographical patterns and community assembly …

Climate, host and geography shape insect and fungal communities of trees

I Franić, E Allan, S Prospero, K Adamson, F Attorre… - Scientific reports, 2023 - nature.com
Non-native pests, climate change, and their interactions are likely to alter relationships
between trees and tree-associated organisms with consequences for forest health. To …

Is microbial terroir related to geographic distance between vineyards?

T Miura, R Sánchez, LE Castañeda… - Environmental …, 2017 - Wiley Online Library
While there are substantial studies suggesting that characteristics of wine are related to
regional microbial community composition (microbial terroir), there has been little discussion …

Soil bacterial communities exhibit strong biogeographic patterns at fine taxonomic resolution

SK Bay, MA McGeoch, O Gillor, N Wieler, DJ Palmer… - Msystems, 2020 - Am Soc Microbiol
Bacteria have been inferred to exhibit relatively weak biogeographic patterns. To what
extent such findings reflect true biological phenomena or methodological artifacts remains …

Species diversity of fungal endophytes across a stress gradient for plants

R Oono, D Black, E Slessarev, B Sickler… - New …, 2020 - Wiley Online Library
Foliar fungal endophytes are one of the most diverse guilds of symbiotic fungi found in the
photosynthetic tissues of every plant lineage, but it is unclear how plant environments and …