Computational prediction of drug–target interactions using chemogenomic approaches: an empirical survey

A Ezzat, M Wu, XL Li, CK Kwoh - Briefings in bioinformatics, 2019 - academic.oup.com
Computational prediction of drug–target interactions (DTIs) has become an essential task in
the drug discovery process. It narrows down the search space for interactions by suggesting …

Methods for biological data integration: perspectives and challenges

V Gligorijević, N Pržulj - Journal of the Royal Society …, 2015 - royalsocietypublishing.org
Rapid technological advances have led to the production of different types of biological data
and enabled construction of complex networks with various types of interactions between …

Graph matching and learning in pattern recognition in the last 10 years

P Foggia, G Percannella, M Vento - International Journal of Pattern …, 2014 - World Scientific
In this paper, we examine the main advances registered in the last ten years in Pattern
Recognition methodologies based on graph matching and related techniques, analyzing …

Topology identification and learning over graphs: Accounting for nonlinearities and dynamics

GB Giannakis, Y Shen… - Proceedings of the …, 2018 - ieeexplore.ieee.org
Identifying graph topologies as well as processes evolving over graphs emerge in various
applications involving gene-regulatory, brain, power, and social networks, to name a few …

Robust semi-supervised nonnegative matrix factorization for image clustering

S Peng, W Ser, B Chen, Z Lin - Pattern Recognition, 2021 - Elsevier
Nonnegative matrix factorization (NMF) is a powerful dimension reduction method, and has
received increasing attention in various practical applications. However, most traditional …

Graph clustering via variational graph embedding

L Guo, Q Dai - Pattern Recognition, 2022 - Elsevier
Graph clustering based on embedding aims to divide nodes with higher similarity into
several mutually disjoint groups, but it is not a trivial task to maximumly embed the graph …

Robust bi-stochastic graph regularized matrix factorization for data clustering

Q Wang, X He, X Jiang, X Li - IEEE transactions on pattern …, 2020 - ieeexplore.ieee.org
Data clustering, which is to partition the given data into different groups, has attracted much
attention. Recently various effective algorithms have been developed to tackle the task …

Correntropy-based hypergraph regularized NMF for clustering and feature selection on multi-cancer integrated data

N Yu, MJ Wu, JX Liu, CH Zheng… - IEEE transactions on …, 2020 - ieeexplore.ieee.org
Non-negative matrix factorization (NMF) has become one of the most powerful methods for
clustering and feature selection. However, the performance of the traditional NMF method …

Multi-view data clustering via non-negative matrix factorization with manifold regularization

GA Khan, J Hu, T Li, B Diallo, H Wang - International Journal of Machine …, 2022 - Springer
Nowadays, non-negative matrix factorization (NMF) based cluster analysis for multi-view
data shows impressive behavior in machine learning. Usually, multi-view data have …

Spatial–spectral-graph-regularized low-rank tensor decomposition for multispectral and hyperspectral image fusion

K Zhang, M Wang, S Yang, L Jiao - IEEE Journal of Selected …, 2018 - ieeexplore.ieee.org
Hyperspectral (HS) and multispectral (MS) image fusion aims at producing high-resolution
HS (HRHS) images. However, the existing methods could not simultaneously consider the …