[HTML][HTML] Comparison and evaluation of statistical error models for scRNA-seq
S Choudhary, R Satija - Genome biology, 2022 - Springer
Background Heterogeneity in single-cell RNA-seq (scRNA-seq) data is driven by multiple
sources, including biological variation in cellular state as well as technical variation …
sources, including biological variation in cellular state as well as technical variation …
Goals and approaches for each processing step for single-cell RNA sequencing data
Single-cell RNA sequencing (scRNA-seq) has enabled researchers to study gene
expression at the cellular level. However, due to the extremely low levels of transcripts in a …
expression at the cellular level. However, due to the extremely low levels of transcripts in a …
[HTML][HTML] Ref-1 redox activity alters cancer cell metabolism in pancreatic cancer: exploiting this novel finding as a potential target
Background Pancreatic cancer is a complex disease with a desmoplastic stroma, extreme
hypoxia, and inherent resistance to therapy. Understanding the signaling and adaptive …
hypoxia, and inherent resistance to therapy. Understanding the signaling and adaptive …
Identification of differentially distributed gene expression and distinct sets of cancer-related genes identified by changes in mean and variability
AGK Roberts, DR Catchpoole… - NAR Genomics and …, 2022 - academic.oup.com
There is increasing evidence that changes in the variability or overall distribution of gene
expression are important both in normal biology and in diseases, particularly cancer. Genes …
expression are important both in normal biology and in diseases, particularly cancer. Genes …
scShapes: a statistical framework for identifying distribution shapes in single-cell RNA-sequencing data
M Dharmaratne, AS Kulkarni, A Taherian Fard… - …, 2023 - academic.oup.com
Background Single-cell RNA sequencing (scRNA-seq) methods have been advantageous
for quantifying cell-to-cell variation by profiling the transcriptomes of individual cells. For …
for quantifying cell-to-cell variation by profiling the transcriptomes of individual cells. For …
SSMD: a semi-supervised approach for a robust cell type identification and deconvolution of mouse transcriptomics data
Deconvolution of mouse transcriptomic data is challenged by the fact that mouse models
carry various genetic and physiological perturbations, making it questionable to assume …
carry various genetic and physiological perturbations, making it questionable to assume …
[HTML][HTML] Leveraging novel integrated single-cell analyses to define HIV-1 latency reversal
S Zhao, A Tsibris - Viruses, 2021 - mdpi.com
While suppressive antiretroviral therapy can effectively limit HIV-1 replication and evolution,
it leaves behind a residual pool of integrated viral genomes that persist in a state of …
it leaves behind a residual pool of integrated viral genomes that persist in a state of …
[HTML][HTML] The International Conference on Intelligent Biology and Medicine (ICIBM) 2019: bioinformatics methods and applications for human diseases
Abstract Between June 9–11, 2019, the International Conference on Intelligent Biology and
Medicine (ICIBM 2019) was held in Columbus, Ohio, USA. The conference included 12 …
Medicine (ICIBM 2019) was held in Columbus, Ohio, USA. The conference included 12 …
A data denoising approach to optimize functional clustering of single cell RNA-sequencing data
Single cell RNA-sequencing (scRNA-seq) technology enables comprehensive
transcriptomic profiling of thousands of cells with distinct phenotypic and physiological states …
transcriptomic profiling of thousands of cells with distinct phenotypic and physiological states …
[图书][B] Discovery and Interpretation of Subspace Structures in Omics Data by Low-Rank Representation
X Lu - 2022 - search.proquest.com
Biological functions in cells are highly complicated and heterogenous, and can be reflected
by omics data, such as gene expression levels. Detecting subspace structures in omics data …
by omics data, such as gene expression levels. Detecting subspace structures in omics data …