Animal functional magnetic resonance imaging: trends and path toward standardization

F Mandino, DH Cerri, CM Garin, M Straathof… - Frontiers in …, 2020 - frontiersin.org
Animal whole-brain functional magnetic resonance imaging (fMRI) provides a non-invasive
window into brain activity. A collection of associated methods aims to replicate observations …

DPABI: data processing & analysis for (resting-state) brain imaging

CG Yan, XD Wang, XN Zuo, YF Zang - Neuroinformatics, 2016 - Springer
Brain imaging efforts are being increasingly devoted to decode the functioning of the human
brain. Among neuroimaging techniques, resting-state fMRI (R-fMRI) is currently expanding …

Considerations for resting state functional MRI and functional connectivity studies in rodents

WJ Pan, JCW Billings, JK Grooms, S Shakil… - Frontiers in …, 2015 - frontiersin.org
Resting state functional MRI (rs-fMRI) and functional connectivity mapping have become
widely used tools in the human neuroimaging community and their use is rapidly spreading …

[HTML][HTML] Waxholm Space atlas of the Sprague Dawley rat brain

EA Papp, TB Leergaard, E Calabrese, GA Johnson… - Neuroimage, 2014 - Elsevier
Three-dimensional digital brain atlases represent an important new generation of
neuroinformatics tools for understanding complex brain anatomy, assigning location to …

High resolution three-dimensional brain atlas using an average magnetic resonance image of 40 adult C57Bl/6J mice

AE Dorr, JP Lerch, S Spring, N Kabani, RM Henkelman - Neuroimage, 2008 - Elsevier
Detailed anatomical atlases can provide considerable interpretive power in studies of both
human and rodent neuroanatomy. Here we describe a three-dimensional atlas of the mouse …

Uncovering hidden brain state dynamics that regulate performance and decision-making during cognition

J Taghia, W Cai, S Ryali, J Kochalka, J Nicholas… - Nature …, 2018 - nature.com
Human cognition is influenced not only by external task demands but also latent mental
processes and brain states that change over time. Here, we use novel Bayesian switching …

Waxholm space: an image-based reference for coordinating mouse brain research

GA Johnson, A Badea, J Brandenburg, G Cofer… - Neuroimage, 2010 - Elsevier
We describe an atlas of the C57BL/6 mouse brain based on MRI and conventional Nissl
histology. Magnetic resonance microscopy was performed on a total of 14 specimens that …

An in vivo MRI Template Set for Morphometry, Tissue Segmentation, and fMRI Localization in Rats

PA Valdés-Hernández, A Sumiyoshi… - Frontiers in …, 2011 - frontiersin.org
Over the last decade, several papers have focused on the construction of highly detailed
mouse high field magnetic resonance image (MRI) templates via non-linear registration to …

[HTML][HTML] The SIGMA rat brain templates and atlases for multimodal MRI data analysis and visualization

DA Barrière, R Magalhães, A Novais, P Marques… - Nature …, 2019 - nature.com
Preclinical imaging studies offer a unique access to the rat brain, allowing investigations that
go beyond what is possible in human studies. Unfortunately, these techniques still suffer …

[HTML][HTML] Prodromal neuroinflammatory, cholinergic and metabolite dysfunction detected by PET and MRS in the TgF344-AD transgenic rat model of AD: a collaborative …

AM Chaney, FR Lopez-Picon, S Serrière, R Wang… - Theranostics, 2021 - ncbi.nlm.nih.gov
Mouse models of Alzheimer's disease (AD) are valuable but do not fully recapitulate human
AD pathology, such as spontaneous Tau fibril accumulation and neuronal loss …