Graph representation learning in bioinformatics: trends, methods and applications
Graph is a natural data structure for describing complex systems, which contains a set of
objects and relationships. Ubiquitous real-life biomedical problems can be modeled as …
objects and relationships. Ubiquitous real-life biomedical problems can be modeled as …
Machine learning approaches and databases for prediction of drug–target interaction: a survey paper
The task of predicting the interactions between drugs and targets plays a key role in the
process of drug discovery. There is a need to develop novel and efficient prediction …
process of drug discovery. There is a need to develop novel and efficient prediction …
Comparative toxicogenomics database (CTD): update 2021
AP Davis, CJ Grondin, RJ Johnson… - Nucleic acids …, 2021 - academic.oup.com
Abstract The public Comparative Toxicogenomics Database (CTD; http://ctdbase. org/) is an
innovative digital ecosystem that relates toxicological information for chemicals, genes …
innovative digital ecosystem that relates toxicological information for chemicals, genes …
Comparative toxicogenomics database (CTD): update 2023
AP Davis, TC Wiegers, RJ Johnson… - Nucleic acids …, 2023 - academic.oup.com
Abstract The Comparative Toxicogenomics Database (CTD; http://ctdbase. org/) harmonizes
cross-species heterogeneous data for chemical exposures and their biological …
cross-species heterogeneous data for chemical exposures and their biological …
The comparative toxicogenomics database: update 2019
AP Davis, CJ Grondin, RJ Johnson… - Nucleic acids …, 2019 - academic.oup.com
Abstract The Comparative Toxicogenomics Database (CTD; http://ctdbase. org/) is a premier
public resource for literature-based, manually curated associations between chemicals …
public resource for literature-based, manually curated associations between chemicals …
The harmonizome: a collection of processed datasets gathered to serve and mine knowledge about genes and proteins
AD Rouillard, GW Gundersen, NF Fernandez… - Database, 2016 - academic.oup.com
Genomics, epigenomics, transcriptomics, proteomics and metabolomics efforts rapidly
generate a plethora of data on the activity and levels of biomolecules within mammalian …
generate a plethora of data on the activity and levels of biomolecules within mammalian …
An attention-based BiLSTM-CRF approach to document-level chemical named entity recognition
Motivation In biomedical research, chemical is an important class of entities, and chemical
named entity recognition (NER) is an important task in the field of biomedical information …
named entity recognition (NER) is an important task in the field of biomedical information …
[HTML][HTML] BioCreative V CDR task corpus: a resource for chemical disease relation extraction
J Li, Y Sun, RJ Johnson, D Sciaky, CH Wei… - Database, 2016 - academic.oup.com
Community-run, formal evaluations and manually annotated text corpora are critically
important for advancing biomedical text-mining research. Recently in BioCreative V, a new …
important for advancing biomedical text-mining research. Recently in BioCreative V, a new …
The comparative toxicogenomics database: update 2017
AP Davis, CJ Grondin, RJ Johnson… - Nucleic acids …, 2017 - academic.oup.com
Abstract The Comparative Toxicogenomics Database (CTD; http://ctdbase. org/) provides
information about interactions between chemicals and gene products, and their …
information about interactions between chemicals and gene products, and their …
Epigenetic inheritance and the missing heritability
Genome-wide association studies of complex physiological traits and diseases consistently
found that associated genetic factors, such as allelic polymorphisms or DNA mutations, only …
found that associated genetic factors, such as allelic polymorphisms or DNA mutations, only …