Transposable elements in plants: Recent advancements, tools and prospects

M Ramakrishnan, L Satish, A Sharma… - Plant Molecular Biology …, 2022 - Springer
Transposable elements (TEs) have long been considered junk DNA; however, the
availability of genome sequences and the growth of omics databases have accelerated the …

Retrotransposons: How the continuous evolutionary front shapes plant genomes for response to heat stress

PK Papolu, M Ramakrishnan, S Mullasseri… - Frontiers in plant …, 2022 - frontiersin.org
Long terminal repeat retrotransposons (LTR retrotransposons) are the most abundant group
of mobile genetic elements in eukaryotic genomes and are essential in organizing genomic …

The power of retrotransposons in high-throughput genotyping and sequencing

YE Arvas, S Marakli, Y Kaya, R Kalendar - Frontiers in plant science, 2023 - frontiersin.org
The use of molecular markers has become an essential part of molecular genetics through
their application in numerous fields, which includes identification of genes associated with …

Genetic and epigenetic reprogramming in response to internal and external cues by induced transposon mobilization in Moso bamboo

LH Zou, B Zhu, Y Chen, Y Lu, M Ramkrishnan… - New …, 2024 - Wiley Online Library
Long terminal repeat retroelements (LTR‐REs) have profound effects on DNA methylation
and gene regulation. Despite the vast abundance of LTR‐REs in the genome of Moso …

Development of an efficient expression system with large cargo capacity for interrogation of gene function in bamboo based on bamboo mosaic virus

Y Jin, B Wang, M Bao, Y Li, S Xiao… - Journal of Integrative …, 2023 - Wiley Online Library
Bamboo is one of the fastest growing plants among monocotyledonous species and is
grown extensively in subtropical regions. Although bamboo has high economic value and …

Haplotype-resolved genome of Prunus zhengheensis provides insight into its evolution and low temperature adaptation in apricot

W Tan, P Zhou, X Huang, R Liao, X Wang… - Horticulture …, 2024 - academic.oup.com
Prunus zhengheensis, an extremely rare population of apricots, originated in warm South-
East China and is an excellent material for genetic breeding. However, most apricots and …

Exploration on cold adaptation of Antarctic lichen via detection of positive selection genes

Y Wang, Y Zhang, R Li, B Qian, X Du, X Qiu, M Chen… - IMA fungus, 2024 - Springer
Lichen as mutualistic symbiosis is the dominant organism in various extreme terrestrial
environment on Earth, however, the mechanisms of their adaptation to extreme habitats …

Role of Dof transcription factors under abiotic stresses

A Khan, F Bibi, SA Jan, ZK Shinwari - … Academy of Sciences: B. Life and …, 2023 - ppaspk.org
For the survival of the rapidly growing global population, plant species must exhibit
tolerance towards climate change. Plants possess mechanisms to respond to stress by …

Identification and characterization of genome‐wide long terminal repeat retrotransposons provide an insight into elucidating the trait evolution of five Rhododendron …

S Wen, H Zhao, G Qiao, X Shen - Plant Biology, 2023 - Wiley Online Library
Rhododendron is well‐known for its beauty and colourful corolla. Although some high‐
quality whole‐genome sequencing of it has been completed, there are few studies on long …

Stress-responsive retrotransposable elements in conifers

T Ujino-Ihara - Genes & Genetic Systems, 2022 - jstage.jst.go.jp
Conifers are important in many forest ecosystems. They have a long generation time and are
immobile; therefore, they require considerable plasticity to adapt to environmental stresses …