Climate change impacts on food security-focus on perennial cropping systems and nutritional value

CP Leisner - Plant Science, 2020 - Elsevier
Anthropogenic increases in fossil fuel emissions have been a primary driver of increased
concentrations of atmospheric carbon dioxide ([CO 2]) and other greenhouse gases …

Natural variation in crops: realized understanding, continuing promise

Y Liang, HJ Liu, J Yan, F Tian - Annual review of plant biology, 2021 - annualreviews.org
Crops feed the world's population and shape human civilization. The improvement of crop
productivity has been ongoing for almost 10,000 years and has evolved from an experience …

De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes

MB Hufford, AS Seetharam, MR Woodhouse… - Science, 2021 - science.org
We report de novo genome assemblies, transcriptomes, annotations, and methylomes for
the 26 inbreds that serve as the founders for the maize nested association mapping …

A multi-omics integrative network map of maize

L Han, W Zhong, J Qian, M Jin, P Tian, W Zhu… - Nature …, 2023 - nature.com
Networks are powerful tools to uncover functional roles of genes in phenotypic variation at a
system-wide scale. Here, we constructed a maize network map that contains the genomic …

Genome-wide dissection of changes in maize root system architecture during modern breeding

W Ren, L Zhao, J Liang, L Wang, L Chen, P Li, Z Liu… - Nature Plants, 2022 - nature.com
Appropriate root system architecture (RSA) can improve maize yields in densely planted
fields, but little is known about its genetic basis in maize. Here we performed root …

Decoding disease: from genomes to networks to phenotypes

AK Wong, RSG Sealfon, CL Theesfeld… - Nature Reviews …, 2021 - nature.com
Interpreting the effects of genetic variants is key to understanding individual susceptibility to
disease and designing personalized therapeutic approaches. Modern experimental …

Genome wide association study reveals plant loci controlling heritability of the rhizosphere microbiome

S Deng, DF Caddell, G Xu, L Dahlen… - The ISME …, 2021 - academic.oup.com
Host genetics has recently been shown to be a driver of plant microbiome composition.
However, identifying the underlying genetic loci controlling microbial selection remains …

Charting plant gene functions in the multi-omics and single-cell era

T Depuydt, B De Rybel, K Vandepoele - Trends in Plant Science, 2023 - cell.com
Despite the increased access to high-quality plant genome sequences, the set of genes with
a known function remains far from complete. With the advent of novel bulk and single-cell …

GWAS and WGCNA uncover hub genes controlling salt tolerance in maize (Zea mays L.) seedlings

L Ma, M Zhang, J Chen, C Qing, S He, C Zou… - Theoretical and Applied …, 2021 - Springer
Keymessage Two hub genes GRMZM2G075104 and GRMZM2G333183 involved in salt
tolerance were identified by GWAS and WGCNA. Furthermore, they were verified to affect …

Specialized phenolic compounds in seeds: Structures, functions, and regulations

M Corso, F Perreau, G Mouille, L Lepiniec - Plant Science, 2020 - Elsevier
Plants produce a huge diversity of specialized metabolites (SM) throughout their life cycle
that play important physiological and ecological functions. SM can protect plants and seeds …