Plant virus metagenomics: advances in virus discovery

MJ Roossinck, DP Martin, P Roumagnac - Phytopathology, 2015 - Am Phytopath Society
In recent years plant viruses have been detected from many environments, including
domestic and wild plants and interfaces between these systems—aquatic sources, feces of …

Illuminating an ecological blackbox: using high throughput sequencing to characterize the plant virome across scales

F Maclot, T Candresse, D Filloux… - Frontiers in …, 2020 - frontiersin.org
The ecology of plant viruses began to be explored at the end of the 19th century. Since then,
major advances have revealed mechanisms of virus-host-vector interactions in various …

SDT: a virus classification tool based on pairwise sequence alignment and identity calculation

BM Muhire, A Varsani, DP Martin - PloS one, 2014 - journals.plos.org
The perpetually increasing rate at which viral full-genome sequences are being determined
is creating a pressing demand for computational tools that will aid the objective classification …

Revision of Begomovirus taxonomy based on pairwise sequence comparisons

Viruses of the genus Begomovirus (family Geminiviridae) are emergent pathogens of crops
throughout the tropical and subtropical regions of the world. By virtue of having a small DNA …

Capulavirus and Grablovirus: two new genera in the family Geminiviridae

A Varsani, P Roumagnac, M Fuchs, J Navas-Castillo… - Archives of …, 2017 - Springer
Geminiviruses are plant-infecting single-stranded DNA viruses that occur in most parts of the
world. Currently, there are seven genera within the family Geminiviridae (Becurtovirus …

Establishment of three new genera in the family Geminiviridae: Becurtovirus, Eragrovirus and Turncurtovirus

A Varsani, J Navas-Castillo, E Moriones… - Archives of …, 2014 - Springer
The family Geminiviridae includes plant-infecting circular single-stranded DNA viruses that
have geminate particle morphology. Members of this family infect both monocotyledonous …

Begomoviruses: what is the secret (s) of their success?

E Fiallo-Olivé, J Navas-Castillo - Trends in Plant Science, 2023 - cell.com
Begomoviruses constitute an extremely successful group of emerging plant viruses
transmitted by whiteflies of the Bemisia tabaci complex. Hosts include important vegetable …

Geometagenomics illuminates the impact of agriculture on the distribution and prevalence of plant viruses at the ecosystem scale

P Bernardo, T Charles-Dominique, M Barakat… - The ISME …, 2018 - academic.oup.com
Disease emergence events regularly result from human activities such as agriculture, which
frequently brings large populations of genetically uniform hosts into contact with potential …

Virus latency and the impact on plants

H Takahashi, T Fukuhara, H Kitazawa… - Frontiers in …, 2019 - frontiersin.org
Plant viruses are thought to be essentially harmful to the lives of their cultivated crop hosts.
In most cases studied, the interaction between viruses and cultivated crop plants negatively …

Global advances in tomato virome research: current status and the impact of high-throughput sequencing

MPS Rivarez, A Vučurović, N Mehle… - Frontiers in …, 2021 - frontiersin.org
Viruses cause a big fraction of economically important diseases in major crops, including
tomato. In the past decade (2011–2020), many emerging or re-emerging tomato-infecting …