[HTML][HTML] The origins and potential future of SARS-CoV-2 variants of concern in the evolving COVID-19 pandemic

SP Otto, T Day, J Arino, C Colijn, J Dushoff, M Li… - Current Biology, 2021 - cell.com
One year into the global COVID-19 pandemic, the focus of attention has shifted to the
emergence and spread of SARS-CoV-2 variants of concern (VOCs). After nearly a year of …

Immune evasion of SARS-CoV-2 emerging variants: what have we learnt so far?

I Lazarevic, V Pravica, D Miljanovic, M Cupic - Viruses, 2021 - mdpi.com
Despite the slow evolutionary rate of SARS-CoV-2 relative to other RNA viruses, its massive
and rapid transmission during the COVID-19 pandemic has enabled it to acquire significant …

[HTML][HTML] Early transmissibility assessment of the N501Y mutant strains of SARS-CoV-2 in the United Kingdom, October to November 2020

K Leung, MHH Shum, GM Leung, TTY Lam… - …, 2021 - eurosurveillance.org
Two new SARS-CoV-2 lineages with the N501Y mutation in the receptor-binding domain of
the spike protein spread rapidly in the United Kingdom. We estimated that the earlier 501Y …

Molecular characteristics, immune evasion, and impact of SARS-CoV-2 variants

C Sun, C Xie, GL Bu, LY Zhong, MS Zeng - Signal Transduction and …, 2022 - nature.com
The persistent COVID-19 pandemic since 2020 has brought an enormous public health
burden to the global society and is accompanied by various evolution of the virus genome …

Force-tuned avidity of spike variant-ACE2 interactions viewed on the single-molecule level

R Zhu, D Canena, M Sikora, M Klausberger… - nature …, 2022 - nature.com
Recent waves of COVID-19 correlate with the emergence of the Delta and the Omicron
variant. We report that the Spike trimer acts as a highly dynamic molecular caliper, thereby …

[HTML][HTML] Clinical characteristics, transmissibility, pathogenicity, susceptible populations, and re-infectivity of prominent COVID-19 variants

Z Yang, S Zhang, YP Tang, S Zhang, DQ Xu… - Aging and …, 2022 - ncbi.nlm.nih.gov
In addition to the rapid, global spread of SARS-CoV-2, new and comparatively more
contagious variants are of considerable concern. These emerging mutations have become a …

Quantifying the transmission advantage associated with N501Y substitution of SARS-CoV-2 in the UK: an early data-driven analysis

S Zhao, J Lou, L Cao, H Zheng… - Journal of travel …, 2021 - academic.oup.com
The emerging N501Y mutation in severe acute respiratory syndrome coronavirus 2, which
becomes prevalent in the UK rapidly, is one of the major challenges of COVID-19 control. To …

SARS-CoV-2 variants and their relevant mutational profiles: update summer 2021

M Alkhatib, V Svicher, R Salpini… - Microbiology …, 2021 - Am Soc Microbiol
Since the beginning of the coronavirus disease 2019 (COVID-19) pandemic caused by it,
severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has been undergoing a …

Comparative perturbation-based modeling of the SARS-CoV-2 spike protein binding with host receptor and neutralizing antibodies: Structurally adaptable allosteric …

GM Verkhivker, S Agajanian, DY Oztas, G Gupta - Biochemistry, 2021 - ACS Publications
In this study, we used an integrative computational approach to examine molecular
mechanisms and determine functional signatures underlying the role of functional residues …

Applications of molecular dynamics simulation in protein study

S Sinha, B Tam, SM Wang - Membranes, 2022 - mdpi.com
Molecular Dynamics (MD) Simulations is increasingly used as a powerful tool to study
protein structure-related questions. Starting from the early simulation study on the …