Autonomous discovery in the chemical sciences part I: Progress

CW Coley, NS Eyke, KF Jensen - … Chemie International Edition, 2020 - Wiley Online Library
This two‐part Review examines how automation has contributed to different aspects of
discovery in the chemical sciences. In this first part, we describe a classification for …

[HTML][HTML] Reactivity of covalent fragments and their role in fragment based drug discovery

K McAulay, A Bilsland, M Bon - Pharmaceuticals, 2022 - mdpi.com
Fragment based drug discovery has long been used for the identification of new ligands and
interest in targeted covalent inhibitors has continued to grow in recent years, with high …

Fragment-to-lead medicinal chemistry publications in 2019

W Jahnke, DA Erlanson, IJP De Esch… - Journal of medicinal …, 2020 - ACS Publications
Fragment-based drug discovery (FBDD) has grown and matured to a point where it is
valuable to keep track of its extent and details of application. This Perspective summarizes …

[HTML][HTML] An automatic pipeline for the design of irreversible derivatives identifies a potent SARS-CoV-2 Mpro inhibitor

D Zaidman, P Gehrtz, M Filep, D Fearon, R Gabizon… - Cell chemical …, 2021 - cell.com
Designing covalent inhibitors is increasingly important, although it remains challenging.
Here, we present covalentizer, a computational pipeline for identifying irreversible inhibitors …

Mechanism-based and computational-driven covalent drug design

YL Luo - Journal of Chemical Information and Modeling, 2021 - ACS Publications
Covalent drugs offer higher efficacy and longer duration of action than their noncovalent
counterparts. Significant advances in computational methods for modeling covalent drugs …

Exploring the structural activity relationship of the osimertinib: A covalent inhibitor of double mutant EGFRL858R/T790M tyrosine kinase for the treatment of Non-Small …

BR Patil, KV Bhadane, I Ahmad, YJ Agrawal… - Bioorganic & Medicinal …, 2024 - Elsevier
The USFDA granted regular approval to Osimertinib (AZD9291) on March 30, 2017, for
treating individuals with metastatic Non-Small Cell Lung Cancer having EGFR T790M …

Discovery of a PDZ Domain Inhibitor Targeting the Syndecan/Syntenin Protein–Protein Interaction: A Semi-Automated “Hit Identification-to-Optimization” Approach

L Hoffer, M Garcia, R Leblanc, M Feracci… - Journal of Medicinal …, 2023 - ACS Publications
The rapid identification of early hits by fragment-based approaches and subsequent hit-to-
lead optimization represents a challenge for drug discovery. To address this challenge, we …

Advanced technologies for screening and identifying covalent inhibitors

Y Guo, A Tong, Y Wang - TrAC Trends in Analytical Chemistry, 2024 - Elsevier
Covalent inhibitors, forming reversible or irreversible covalent bonds with nucleophilic
groups in target protein active sites, effectively inhibit protein function for therapeutic …

Cov_FB3D: a de novo covalent drug design protocol integrating the BA-SAMP strategy and machine-learning-based synthetic tractability evaluation

L Wei, W Wen, L Rao, Y Huang, M Lei… - Journal of Chemical …, 2020 - ACS Publications
De novo drug design actively seeks to use sets of chemical rules for the fast and efficient
identification of structurally new chemotypes with the desired set of biological properties …

SCARdock: A Web Server and Manually Curated Resource for Discovering Covalent Ligands

Q Song, L Zeng, Q Zheng, S Liu - ACS omega, 2023 - ACS Publications
Background: Covalent drugs have been intentionally discarded historically due to the
concern of off-target side effects, but the past decade has seen a fast resurgence of the …