The important contribution of transposable elements to phenotypic variation and evolution
NS Catlin, EB Josephs - Current opinion in plant biology, 2022 - Elsevier
Transposable elements (TEs) are responsible for significant genomic variation in plants. Our
understanding of the evolutionary forces shaping TE polymorphism has lagged behind other …
understanding of the evolutionary forces shaping TE polymorphism has lagged behind other …
A cis-regulatory atlas in maize at single-cell resolution
Summary cis-regulatory elements (CREs) encode the genomic blueprints of spatiotemporal
gene expression programs enabling highly specialized cell functions. Using single-cell …
gene expression programs enabling highly specialized cell functions. Using single-cell …
Genome-wide analyses of introgression between two sympatric Asian oak species
Introgression can be an important source of new alleles for adaption under rapidly changing
environments, perhaps even more important than standing variation. Though introgression …
environments, perhaps even more important than standing variation. Though introgression …
Mapping regulatory determinants in plants
M Galli, F Feng, A Gallavotti - Frontiers in Genetics, 2020 - frontiersin.org
The domestication and improvement of many plant species have frequently involved
modulation of transcriptional outputs and continue to offer much promise for targeted trait …
modulation of transcriptional outputs and continue to offer much promise for targeted trait …
Conserved noncoding sequences provide insights into regulatory sequence and loss of gene expression in maize
Thousands of species will be sequenced in the next few years; however, understanding how
their genomes work, without an unlimited budget, requires both molecular and novel …
their genomes work, without an unlimited budget, requires both molecular and novel …
A comprehensive annotation dataset of intact LTR retrotransposons of 300 plant genomes
LTR retrotransposons (LTR-RTs) are ubiquitous and represent the dominant repeat element
in plant genomes, playing important roles in functional variation, genome plasticity and …
in plant genomes, playing important roles in functional variation, genome plasticity and …
Canalization of genome-wide transcriptional activity in Arabidopsis thaliana accessions by MET1-dependent CG methylation
Background Despite its conserved role on gene expression and transposable element (TE)
silencing, genome-wide CG methylation differs substantially between wild Arabidopsis …
silencing, genome-wide CG methylation differs substantially between wild Arabidopsis …
Enhancers as potential targets for engineering salinity stress tolerance in crop plants
Enhancers represent noncoding regulatory regions of the genome located distantly from
their target genes. They regulate gene expression programs in a context‐specific manner …
their target genes. They regulate gene expression programs in a context‐specific manner …
Genetic and epigenetic contributions to variation in transposable element expression responses to abiotic stress in maize
Transposable elements (TEs) pervade most eukaryotic genomes but the repetitive nature of
TEs has complicated the analysis of their expression. Although the majority of TEs are silent …
TEs has complicated the analysis of their expression. Although the majority of TEs are silent …