Fungal metabolic gene clusters—caravans traveling across genomes and environments

JH Wisecaver, A Rokas - Frontiers in microbiology, 2015 - frontiersin.org
Metabolic gene clusters (MGCs), physically co-localized genes participating in the same
metabolic pathway, are signature features of fungal genomes. MGCs are most often …

Ecology of Scedosporium Species: Present Knowledge and Future Research

A Rougeron, S Giraud, A Alastruey-Izquierdo… - Mycopathologia, 2018 - Springer
The genus Scedosporium, which comprises at least five clinically relevant species, ie
Scedosporium apiospermum, Scedosporium boydii, Scedosporium aurantiacum …

The evolution of fungal metabolic pathways

JH Wisecaver, JC Slot, A Rokas - PLoS genetics, 2014 - journals.plos.org
Fungi contain a remarkable range of metabolic pathways, sometimes encoded by gene
clusters, enabling them to digest most organic matter and synthesize an array of potent small …

Comparative genomic study of the Penicillium genus elucidates a diverse pangenome and 15 lateral gene transfer events

C Petersen, T Sørensen, MR Nielsen, TE Sondergaard… - IMA fungus, 2023 - Springer
The Penicillia are known to produce a wide range natural products—some with devastating
outcome for the agricultural industry and others with unexploited potential in different …

Global transcriptional analysis suggests Lasiodiplodia theobromae pathogenicity factors involved in modulation of grapevine defensive response

M Paolinelli-Alfonso, JM Villalobos-Escobedo… - BMC genomics, 2016 - Springer
Background Lasiodiplodia theobromae is a fungus of the Botryosphaeriaceae that causes
grapevine vascular disease, especially in regions with hot climates. Fungi in this group often …

Dimensions of horizontal gene transfer in eukaryotic microbial pathogens

E Gluck-Thaler, JC Slot - PLoS pathogens, 2015 - journals.plos.org
Comparative genomic studies of microorganisms have disrupted the paradigm of vertical
inheritance with modification. First in bacteria, and more recently in microscopic and even …

Fungal gene cluster diversity and evolution

JC Slot - Advances in genetics, 2017 - Elsevier
Metabolic gene clusters (MGCs) have provided some of the earliest glimpses at the
biochemical machinery of yeast and filamentous fungi. MGCs encode diverse genetic …

Endophyte genomes support greater metabolic gene cluster diversity compared with non-endophytes in Trichoderma

K Scott, Z Konkel, E Gluck-Thaler, GE Valero David… - PloS one, 2023 - journals.plos.org
Trichoderma is a cosmopolitan genus with diverse lifestyles and nutritional modes, including
mycotrophy, saprophytism, and endophytism. Previous research has reported greater …

The fumarylacetoacetate hydrolase (FAH) superfamily of enzymes: multifunctional enzymes from microbes to mitochondria

AKH Weiss, JR Loeffler, KR Liedl… - Biochemical Society …, 2018 - portlandpress.com
Prokaryotic and eukaryotic fumarylacetoacetate hydrolase (FAH) superfamily members,
sharing conserved regions that form the so-called FAH-domain, catalyze a remarkable …

Differential retention of gene functions in a secondary metabolite cluster

HT Reynolds, JC Slot, HH Divon… - Molecular biology …, 2017 - academic.oup.com
In fungi, distribution of secondary metabolite (SM) gene clusters is often associated with host-
or environment-specific benefits provided by SMs. In the plant pathogen Alternaria …