[HTML][HTML] Insights from 20 years of bacterial genome sequencing

M Land, L Hauser, SR Jun, I Nookaew… - Functional & integrative …, 2015 - Springer
Since the first two complete bacterial genome sequences were published in 1995, the
science of bacteria has dramatically changed. Using third-generation DNA sequencing, it is …

The evolution and epidemiology of Listeria monocytogenes in Europe and the United States

S Lomonaco, D Nucera, V Filipello - Infection, Genetics and Evolution, 2015 - Elsevier
Listeria monocytogenes is an opportunistic food-borne pathogen responsible for listeriosis,
a disease associated with high mortality rates. L. monocytogenes causes invasive …

[HTML][HTML] Evaluation of Whole Genome Sequencing for Outbreak Detection of Salmonella enterica

P Leekitcharoenphon, EM Nielsen, RS Kaas, O Lund… - PloS one, 2014 - journals.plos.org
Salmonella enterica is a common cause of minor and large food borne outbreaks. To
achieve successful and nearly 'real-time'monitoring and identification of outbreaks, reliable …

[HTML][HTML] Staphylococcus epidermidis pan-genome sequence analysis reveals diversity of skin commensal and hospital infection-associated isolates

S Conlan, LA Mijares… - Genome biology, 2012 - Springer
Abstract Background While Staphylococcus epidermidis is commonly isolated from healthy
human skin, it is also the most frequent cause of nosocomial infections on indwelling …

[HTML][HTML] From field to plate: How do bacterial enteric pathogens interact with ready-to-eat fruit and vegetables, causing disease outbreaks?

GA Thomas, TP Gil, CT Müller, HJ Rogers, CN Berger - Food Microbiology, 2023 - Elsevier
Ready-to-eat fruit and vegetables are a convenient source of nutrients and fibre for
consumers, and are generally safe to eat, but are vulnerable to contamination with human …

[HTML][HTML] Salmonella enterica serovar Infantis from Food and Human Infections, Switzerland, 2010–2015: Poultry-Related Multidrug Resistant Clones and an …

D Hindermann, G Gopinath, H Chase… - Frontiers in …, 2017 - frontiersin.org
Objectives: The aim of this study was to characterize a collection of 520 Salmonella enterica
serovar Infantis strains isolated from food (poultry meat), human infections and …

Global genomic epidemiology of Salmonella enterica serovar Typhimurium DT104

P Leekitcharoenphon, RS Hendriksen… - Applied and …, 2016 - Am Soc Microbiol
It has been 30 years since the initial emergence and subsequent rapid global spread of
multidrug-resistant Salmonella enterica serovar Typhimurium DT104 (MDR DT104) …

[HTML][HTML] On the Evolutionary History, Population Genetics and Diversity among Isolates of Salmonella Enteritidis PFGE Pattern JEGX01.0004

MW Allard, Y Luo, E Strain, J Pettengill, R Timme… - PloS one, 2013 - journals.plos.org
Facile laboratory tools are needed to augment identification in contamination events to trace
the contamination back to the source (traceback) of Salmonella enterica subsp. enterica …

[HTML][HTML] Complete genome sequencing and analysis of endophytic Sphingomonas sp. LK11 and its potential in plant growth

S Asaf, AL Khan, MA Khan, A Al-Harrasi, IJ Lee - 3 Biotech, 2018 - Springer
Our study aimed to elucidate the plant growth-promoting characteristics and the structure
and composition of Sphingomonas sp. LK11 genome using the single molecule real-time …

Phylogenetic Diversity of the Enteric Pathogen Salmonella enterica subsp. enterica Inferred from Genome-Wide Reference-Free SNP Characters

RE Timme, JB Pettengill, MW Allard… - Genome biology and …, 2013 - academic.oup.com
The enteric pathogen Salmonella enterica is one of the leading causes of foodborne illness
in the world. The species is extremely diverse, containing more than 2,500 named serovars …