Detection of SARS-CoV-2 variants mu, beta, gamma, lambda, delta, alpha, and omicron in wastewater settled solids using mutation-specific assays is associated with …

M Wolfe, B Hughes, D Duong… - Applied and …, 2022 - Am Soc Microbiol
Changes in the circulation of SARS-CoV-2 variants of concern (VOCs) may require changes
in the public health response to the COVID-19 pandemic, as they have the potential to …

A rapid, high-throughput, and sensitive PEG-precipitation method for SARS-CoV-2 wastewater surveillance

X Zheng, M Wang, Y Deng, X Xu, D Lin, Y Zhang, S Li… - Water Research, 2023 - Elsevier
The effective application of wastewater surveillance is dependent on testing capacity and
sensitivity to obtain high spatial resolution testing results for a timely targeted public health …

A snapshot of the global drinking water virome: Diversity and metabolic potential vary with residual disinfectant use

B Hegarty, Z Dai, L Raskin, A Pinto, K Wigginton… - Water Research, 2022 - Elsevier
Viruses are important drivers of microbial community ecology and evolution, influencing
microbial mortality, metabolism, and horizontal gene transfer. However, the effects of viruses …

[HTML][HTML] Optimization and evaluation of viral metagenomic amplification and sequencing procedures toward a genome-level resolution of the human fecal DNA virome

G Wang, S Li, Q Yan, R Guo, Y Zhang, F Chen… - Journal of Advanced …, 2023 - Elsevier
Introduction Viruses in the human gut have been linked to health and disease. Deciphering
the gut virome is dependent on metagenomic sequencing of the virus-like particles (VLPs) …

Surface microlayer-mediated virome dissemination in the Central Arctic

J Rahlff, G Westmeijer, J Weissenbach, A Antson… - Microbiome, 2024 - Springer
Background Aquatic viruses act as key players in shaping microbial communities. In polar
environments, they face significant challenges such as limited host availability and harsh …

Chloride enhances DNA reactivity with chlorine under conditions relevant to water treatment

A Szczuka, J Horton, KJ Evans, VT DiPietri… - Environmental …, 2022 - ACS Publications
Free available chlorine (FAC) is widely used to inactivate viruses by oxidizing viral
components, including genomes. It is commonly assumed that hypochlorous acid (HOCl) is …

Ecogenomics and cultivation reveal distinctive viral-bacterial communities in the surface microlayer of a Baltic Sea slick

J Rahlff, M Wietz, HA Giebel, O Bayfield… - ISME …, 2023 - academic.oup.com
Visible surface films, termed slicks, can extensively cover freshwater and marine
ecosystems, with coastal regions being particularly susceptible to their presence. The sea …

[HTML][HTML] Evaluation of a virus concentration method based on ultrafiltration and wet foam elution for studying viruses from large-volume water samples

E Forés, M Rusiñol, M Itarte, S Martínez-Puchol… - Science of the Total …, 2022 - Elsevier
Assessing the presence of viruses in large-volume samples involves cumbersome methods
that require specialized training and laboratory equipment. In this study, a large volume …

Large-scale single-virus genomics uncovers hidden diversity of river water viruses and diversified gene profiles

Y Nishikawa, R Wagatsuma, Y Tsukada… - The ISME …, 2024 - academic.oup.com
Environmental viruses (primarily bacteriophages) are widely recognized as playing an
important role in ecosystem homeostasis through the infection of host cells. However, the …

SARS-CoV-2 variants detection strategies in wastewater samples collected in the Bangkok Metropolitan region

R Tangwangvivat, S Wacharapluesadee… - Viruses, 2023 - mdpi.com
Wastewater surveillance is considered a promising approach for COVID-19 surveillance in
communities. In this study, we collected wastewater samples between November 2020 and …