The selection and function of cell type-specific enhancers
The human body contains several hundred cell types, all of which share the same genome.
In metazoans, much of the regulatory code that drives cell type-specific gene expression is …
In metazoans, much of the regulatory code that drives cell type-specific gene expression is …
Pioneer transcription factors: establishing competence for gene expression
KS Zaret, JS Carroll - Genes & development, 2011 - genesdev.cshlp.org
Transcription factors are adaptor molecules that detect regulatory sequences in the DNA
and target the assembly of protein complexes that control gene expression. Yet much of the …
and target the assembly of protein complexes that control gene expression. Yet much of the …
The pioneer transcription factor FoxA maintains an accessible nucleosome configuration at enhancers for tissue-specific gene activation
M Iwafuchi-Doi, G Donahue, A Kakumanu, JA Watts… - Molecular cell, 2016 - cell.com
Nuclear DNA wraps around core histones to form nucleosomes, which restricts the binding
of transcription factors to gene regulatory sequences. Pioneer transcription factors can bind …
of transcription factors to gene regulatory sequences. Pioneer transcription factors can bind …
Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development
Chromatin modifications are associated with many aspects of gene expression, yet their role
in cellular transitions during development remains elusive. Here, we use a new approach to …
in cellular transitions during development remains elusive. Here, we use a new approach to …
Pancreatic β cell enhancers regulate rhythmic transcription of genes controlling insulin secretion
M Perelis, B Marcheva, K Moynihan Ramsey… - Science, 2015 - science.org
INTRODUCTION The circadian clock is a molecular oscillator that coordinates behavior and
physiology in anticipation of the daily light cycle. Desynchrony of circadian cycles, through …
physiology in anticipation of the daily light cycle. Desynchrony of circadian cycles, through …
The transcriptional landscape of mouse beta cells compared to human beta cells reveals notable species differences in long non-coding RNA and protein-coding …
Background Insulin producing beta cell and glucagon producing alpha cells are colocalized
in pancreatic islets in an arrangement that facilitates the coordinated release of the two …
in pancreatic islets in an arrangement that facilitates the coordinated release of the two …
H3K4 tri‐methylation provides an epigenetic signature of active enhancers
A Pekowska, T Benoukraf, J Zacarias‐Cabeza… - The EMBO …, 2011 - embopress.org
Combinations of post‐translational histone modifications shape the chromatin landscape
during cell development in eukaryotes. However, little is known about the modifications …
during cell development in eukaryotes. However, little is known about the modifications …
[HTML][HTML] A role for H3K4 monomethylation in gene repression and partitioning of chromatin readers
Monomethylation of lysine 4 on histone H3 (H3K4me1) is a well-established feature of
enhancers and promoters, although its function is unknown. Here, we uncover roles for …
enhancers and promoters, although its function is unknown. Here, we uncover roles for …
[HTML][HTML] Animal transcription networks as highly connected, quantitative continua
MD Biggin - Developmental cell, 2011 - cell.com
To understand how transcription factors function, it is essential to determine the range of
genes that they each bind and regulate in vivo. Here I review evidence that most animal …
genes that they each bind and regulate in vivo. Here I review evidence that most animal …
Genome-wide mapping of transcriptional enhancer candidates using DNA and chromatin features in maize
Background While most cells in multicellular organisms carry the same genetic information,
in each cell type only a subset of genes is being transcribed. Such differentiation in gene …
in each cell type only a subset of genes is being transcribed. Such differentiation in gene …