Understanding bacterial cell− cell communication with computational modeling

AB Goryachev - Chemical reviews, 2011 - ACS Publications
In the past decades, bacterial cell-cell communication has captivated interest of a broad
scientific community drawn from a wide spectrum of disciplines including biology, physics …

An integrative circuit–host modelling framework for predicting synthetic gene network behaviours

C Liao, AE Blanchard, T Lu - Nature microbiology, 2017 - nature.com
One fundamental challenge in synthetic biology is the lack of quantitative tools that
accurately describe and predict the behaviours of engineered gene circuits. This challenge …

Foundations for modeling the dynamics of gene regulatory networks: a multilevel-perspective review

I Sanchez-Osorio, F Ramos, P Mayorga… - … of bioinformatics and …, 2014 - World Scientific
A promising alternative for unraveling the principles under which the dynamic interactions
among genes lead to cellular phenotypes relies on mathematical and computational models …

Circuit-host coupling induces multifaceted behavioral modulations of a gene switch

AE Blanchard, C Liao, T Lu - Biophysical journal, 2018 - cell.com
Quantitative modeling of gene circuits is fundamentally important to synthetic biology, as it
offers the potential to transform circuit engineering from trial-and-error construction to …

Modeling stochastic dynamics in biochemical systems with feedback using maximum caliber

S Pressé, K Ghosh, KA Dill - The Journal of Physical Chemistry B, 2011 - ACS Publications
Complex feedback systems are ubiquitous in biology. Modeling such systems with mass
action laws or master equations requires information rarely measured directly. Thus rates …

Stochastic adaptation and fold-change detection: from single-cell to population behavior

TT Marquez-Lago, A Leier - BMC systems biology, 2011 - Springer
Background In cell signaling terminology, adaptation refers to a system's capability of
returning to its equilibrium upon a transient response. To achieve this, a network has to be …

[PDF][PDF] Mathematical Modelling of Complex Systems and its Possible Applications

K Aihara - Neuroscience, 2008 - alife-robotics.co.jp
This plenary talk is to review our studies on mathematical modelling of complex systems and
its possible applications, which have been carried out by the Aihara Complexity Modelling …

[引用][C] COMPLEX SYSTEMS MODELLING AND ITS APPLICATIONS

K Aihara - Networks, 2005