Understanding bacterial cell− cell communication with computational modeling
AB Goryachev - Chemical reviews, 2011 - ACS Publications
In the past decades, bacterial cell-cell communication has captivated interest of a broad
scientific community drawn from a wide spectrum of disciplines including biology, physics …
scientific community drawn from a wide spectrum of disciplines including biology, physics …
An integrative circuit–host modelling framework for predicting synthetic gene network behaviours
C Liao, AE Blanchard, T Lu - Nature microbiology, 2017 - nature.com
One fundamental challenge in synthetic biology is the lack of quantitative tools that
accurately describe and predict the behaviours of engineered gene circuits. This challenge …
accurately describe and predict the behaviours of engineered gene circuits. This challenge …
Foundations for modeling the dynamics of gene regulatory networks: a multilevel-perspective review
I Sanchez-Osorio, F Ramos, P Mayorga… - … of bioinformatics and …, 2014 - World Scientific
A promising alternative for unraveling the principles under which the dynamic interactions
among genes lead to cellular phenotypes relies on mathematical and computational models …
among genes lead to cellular phenotypes relies on mathematical and computational models …
Circuit-host coupling induces multifaceted behavioral modulations of a gene switch
AE Blanchard, C Liao, T Lu - Biophysical journal, 2018 - cell.com
Quantitative modeling of gene circuits is fundamentally important to synthetic biology, as it
offers the potential to transform circuit engineering from trial-and-error construction to …
offers the potential to transform circuit engineering from trial-and-error construction to …
Modeling stochastic dynamics in biochemical systems with feedback using maximum caliber
Complex feedback systems are ubiquitous in biology. Modeling such systems with mass
action laws or master equations requires information rarely measured directly. Thus rates …
action laws or master equations requires information rarely measured directly. Thus rates …
Stochastic adaptation and fold-change detection: from single-cell to population behavior
TT Marquez-Lago, A Leier - BMC systems biology, 2011 - Springer
Background In cell signaling terminology, adaptation refers to a system's capability of
returning to its equilibrium upon a transient response. To achieve this, a network has to be …
returning to its equilibrium upon a transient response. To achieve this, a network has to be …
[PDF][PDF] Mathematical Modelling of Complex Systems and its Possible Applications
K Aihara - Neuroscience, 2008 - alife-robotics.co.jp
This plenary talk is to review our studies on mathematical modelling of complex systems and
its possible applications, which have been carried out by the Aihara Complexity Modelling …
its possible applications, which have been carried out by the Aihara Complexity Modelling …