Bayesian graphical models for modern biological applications

Y Ni, V Baladandayuthapani, M Vannucci… - Statistical Methods & …, 2022 - Springer
Graphical models are powerful tools that are regularly used to investigate complex
dependence structures in high-throughput biomedical datasets. They allow for holistic …

The horseshoe estimator for sparse signals

CM Carvalho, NG Polson, JG Scott - Biometrika, 2010 - academic.oup.com
This paper proposes a new approach to sparsity, called the horseshoe estimator, which
arises from a prior based on multivariate-normal scale mixtures. We describe the estimator's …

On sampling strategies in Bayesian variable selection problems with large model spaces

G Garcia-Donato… - Journal of the American …, 2013 - Taylor & Francis
One important aspect of Bayesian model selection is how to deal with huge model spaces,
since the exhaustive enumeration of all the models entertained is not feasible and …

Handling sparsity via the horseshoe

CM Carvalho, NG Polson… - Artificial intelligence and …, 2009 - proceedings.mlr.press
This paper presents a general, fully Bayesian framework for sparse supervised-learning
problems based on the horseshoe prior. The horseshoe prior is a member of the family of …

Bayes and empirical-Bayes multiplicity adjustment in the variable-selection problem

JG Scott, JO Berger - The Annals of Statistics, 2010 - JSTOR
This paper studies the multiplicity-correction effect of standard Bayesian variable-selection
priors in linear regression. Our first goal is to clarify when, and how, multiplicity correction …

Bayesian graphical lasso models and efficient posterior computation

H Wang - 2012 - projecteuclid.org
Recently, the graphical lasso procedure has become popular in estimating Gaussian
graphical models. In this paper, we introduce a fully Bayesian treatment of graphical lasso …

Bayesian inference for general Gaussian graphical models with application to multivariate lattice data

A Dobra, A Lenkoski, A Rodriguez - Journal of the American …, 2011 - Taylor & Francis
We introduce efficient Markov chain Monte Carlo methods for inference and model
determination in multivariate and matrix-variate Gaussian graphical models. Our framework …

Scaling it up: Stochastic search structure learning in graphical models

H Wang - 2015 - projecteuclid.org
Gaussian concentration graph models and covariance graph models are two classes of
graphical models that are useful for uncovering latent dependence structures among …

Efficient Gaussian graphical model determination under G-Wishart prior distributions

H Wang, SZ Li - 2012 - projecteuclid.org
This paper proposes a new algorithm for Bayesian model determination in Gaussian
graphical models under G-Wishart prior distributions. We first review recent development in …

Objective Bayesian model selection in Gaussian graphical models

CM Carvalho, JG Scott - Biometrika, 2009 - academic.oup.com
This paper presents a default model-selection procedure for Gaussian graphical models that
involves two new developments. First, we develop a default version of the hyper-inverse …