Fifty years of nuclear pores and nucleocytoplasmic transport studies: multiple tools revealing complex rules
AG Floch, B Palancade, V Doye - Methods in cell biology, 2014 - Elsevier
Nuclear pore complexes (NPCs) are multiprotein assemblies embedded within the nuclear
envelope and involved in the control of the bidirectional transport of proteins and …
envelope and involved in the control of the bidirectional transport of proteins and …
Modeling zero inflation is not necessary for spatial transcriptomics
Background Spatial transcriptomics are a set of new technologies that profile gene
expression on tissues with spatial localization information. With technological advances …
expression on tissues with spatial localization information. With technological advances …
Monte Carlo samplers for efficient network inference
Accessing information on an underlying network driving a biological process often involves
interrupting the process and collecting snapshot data. When snapshot data are stochastic …
interrupting the process and collecting snapshot data. When snapshot data are stochastic …
FISH-Flow, a protocol for the concurrent detection of mRNA and protein in single cells using fluorescence in situ hybridization and flow cytometry
We describe a flow-cytometry-based protocol for intracellular mRNA measurements in
nonadherent mammalian cells using fluorescence in situ hybridization (FISH) probes. The …
nonadherent mammalian cells using fluorescence in situ hybridization (FISH) probes. The …
The current and future applications of in situ hybridization technologies in anatomical pathology
HY Leung, MHY Yeung, WT Leung… - Expert Review of …, 2022 - Taylor & Francis
Introduction In situ hybridization (ISH) plays an important role in the field of molecular
diagnostics, especially in an anatomical pathology laboratory. ISH is a technique that can …
diagnostics, especially in an anatomical pathology laboratory. ISH is a technique that can …
Transcription feedback dynamics in the wake of cytoplasmic mRNA degradation shutdown
A Chappleboim, D Joseph-Strauss… - Nucleic acids …, 2022 - academic.oup.com
In the last decade, multiple studies demonstrated that cells maintain a balance of mRNA
production and degradation, but the mechanisms by which cells implement this balance …
production and degradation, but the mechanisms by which cells implement this balance …
Resolving noise–control conflict by gene duplication
M Chapal, S Mintzer, S Brodsky, M Carmi… - PLoS biology, 2019 - journals.plos.org
Gene duplication promotes adaptive evolution in two main ways: allowing one duplicate to
evolve a new function and splitting ancestral functions between the duplicates. The second …
evolve a new function and splitting ancestral functions between the duplicates. The second …
DDX54 regulates transcriptome dynamics during DNA damage response
The cellular response to genotoxic stress is mediated by a well-characterized network of
DNA surveillance pathways. The contribution of post-transcriptional gene regulatory …
DNA surveillance pathways. The contribution of post-transcriptional gene regulatory …
The nuclear basket mediates perinuclear mRNA scanning in budding yeast
MA Saroufim, P Bensidoun, P Raymond… - Journal of Cell …, 2015 - rupress.org
After synthesis and transit through the nucleus, messenger RNAs (mRNAs) are exported to
the cytoplasm through the nuclear pore complex (NPC). At the NPC, messenger …
the cytoplasm through the nuclear pore complex (NPC). At the NPC, messenger …
Single molecule fluorescence in situ hybridization (smFISH) analysis in budding yeast vegetative growth and meiosis
Single molecule fluorescence in situ hybridization (smFISH) is a powerful technique to study
gene expression in single cells due to its ability to detect and count individual RNA …
gene expression in single cells due to its ability to detect and count individual RNA …