Putting primary metabolism into perspective to obtain better fruits

B Beauvoit, I Belouah, N Bertin, CB Cakpo… - Annals of …, 2018 - academic.oup.com
Background One of the key goals of fruit biology is to understand the factors that influence
fruit growth and quality, ultimately with a view to manipulating them for improvement of fruit …

Practical steps to digital organism models, from laboratory model species to 'Crops in silico

AJ Millar, U Urquiza, PL Freeman… - Journal of …, 2019 - academic.oup.com
A recent initiative named 'Crops in silico'proposes that multi-scale models 'have the potential
to fill in missing mechanistic details and generate new hypotheses to prioritize directed …

Annual transcriptome dynamics in natural environments reveals plant seasonal adaptation

AJ Nagano, T Kawagoe, J Sugisaka, MN Honjo… - Nature plants, 2019 - nature.com
As most organisms have evolved in seasonal environments, their environmental responses
should be adapted to seasonal transitions. Here we show that the combination of …

Crops In Silico: Generating Virtual Crops Using an Integrative and Multi-scale Modeling Platform

A Marshall-Colon, SP Long, DK Allen, G Allen… - Frontiers in plant …, 2017 - frontiersin.org
Multi-scale models can facilitate whole plant simulations by linking gene networks, protein
synthesis, metabolic pathways, physiology, and growth. Whole plant models can be further …

Multiple circadian clock outputs regulate diel turnover of carbon and nitrogen reserves

A Flis, V Mengin, AA Ivakov, ST Mugford… - Plant, cell & …, 2019 - Wiley Online Library
Plants accumulate reserves in the daytime to support growth at night. Circadian regulation of
diel reserve turnover was investigated by profiling starch, sugars, glucose 6‐phosphate …

Time‐resolved interaction proteomics of the GIGANTEA protein under diurnal cycles in Arabidopsis

J Krahmer, GS Goralogia, A Kubota, A Zardilis… - Febs …, 2019 - Wiley Online Library
The plant‐specific protein GIGANTEA (GI) controls many developmental and physiological
processes, mediating rhythmic post‐translational regulation. GI physically binds several …

Multiscale plant modeling: from genome to phenome and beyond

ML Matthews, A Marshall-Colón - Emerging topics in life …, 2021 - portlandpress.com
Plants are complex organisms that adapt to changes in their environment using an array of
regulatory mechanisms that span across multiple levels of biological organization. Due to …

[HTML][HTML] Developmental stage-specific metabolite signatures in Arabidopsis thaliana under optimal and mild nitrogen limitation

JJ Olas, F Apelt, M Watanabe, R Hoefgen, V Wahl - Plant Science, 2021 - Elsevier
Metabolites influence flowering time, and thus are among the major determinants of yield.
Despite the reported role of trehalose 6-phosphate and nitrate signaling on the transition …

An explanatory model of temperature influence on flowering through whole-plant accumulation of FLOWERING LOCUS T in Arabidopsis thaliana

HA Kinmonth-Schultz, MJS MacEwen… - in silico …, 2019 - academic.oup.com
We assessed mechanistic temperature influence on flowering by incorporating temperature-
responsive flowering mechanisms across developmental age into an existing model …

Photosynthetic entrainment of the circadian clock facilitates plant growth under environmental fluctuations: perspectives from an integrated model of phase oscillator …

T Ohara, A Satake - Frontiers in plant science, 2017 - frontiersin.org
Plants need to avoid carbon starvation and resultant growth inhibition under fluctuating light
environments to ensure optimal growth and reproduction. As diel patterns of carbon …