Putting primary metabolism into perspective to obtain better fruits
B Beauvoit, I Belouah, N Bertin, CB Cakpo… - Annals of …, 2018 - academic.oup.com
Background One of the key goals of fruit biology is to understand the factors that influence
fruit growth and quality, ultimately with a view to manipulating them for improvement of fruit …
fruit growth and quality, ultimately with a view to manipulating them for improvement of fruit …
Practical steps to digital organism models, from laboratory model species to 'Crops in silico
A recent initiative named 'Crops in silico'proposes that multi-scale models 'have the potential
to fill in missing mechanistic details and generate new hypotheses to prioritize directed …
to fill in missing mechanistic details and generate new hypotheses to prioritize directed …
Annual transcriptome dynamics in natural environments reveals plant seasonal adaptation
As most organisms have evolved in seasonal environments, their environmental responses
should be adapted to seasonal transitions. Here we show that the combination of …
should be adapted to seasonal transitions. Here we show that the combination of …
Crops In Silico: Generating Virtual Crops Using an Integrative and Multi-scale Modeling Platform
Multi-scale models can facilitate whole plant simulations by linking gene networks, protein
synthesis, metabolic pathways, physiology, and growth. Whole plant models can be further …
synthesis, metabolic pathways, physiology, and growth. Whole plant models can be further …
Multiple circadian clock outputs regulate diel turnover of carbon and nitrogen reserves
A Flis, V Mengin, AA Ivakov, ST Mugford… - Plant, cell & …, 2019 - Wiley Online Library
Plants accumulate reserves in the daytime to support growth at night. Circadian regulation of
diel reserve turnover was investigated by profiling starch, sugars, glucose 6‐phosphate …
diel reserve turnover was investigated by profiling starch, sugars, glucose 6‐phosphate …
Time‐resolved interaction proteomics of the GIGANTEA protein under diurnal cycles in Arabidopsis
The plant‐specific protein GIGANTEA (GI) controls many developmental and physiological
processes, mediating rhythmic post‐translational regulation. GI physically binds several …
processes, mediating rhythmic post‐translational regulation. GI physically binds several …
Multiscale plant modeling: from genome to phenome and beyond
ML Matthews, A Marshall-Colón - Emerging topics in life …, 2021 - portlandpress.com
Plants are complex organisms that adapt to changes in their environment using an array of
regulatory mechanisms that span across multiple levels of biological organization. Due to …
regulatory mechanisms that span across multiple levels of biological organization. Due to …
[HTML][HTML] Developmental stage-specific metabolite signatures in Arabidopsis thaliana under optimal and mild nitrogen limitation
Metabolites influence flowering time, and thus are among the major determinants of yield.
Despite the reported role of trehalose 6-phosphate and nitrate signaling on the transition …
Despite the reported role of trehalose 6-phosphate and nitrate signaling on the transition …
An explanatory model of temperature influence on flowering through whole-plant accumulation of FLOWERING LOCUS T in Arabidopsis thaliana
HA Kinmonth-Schultz, MJS MacEwen… - in silico …, 2019 - academic.oup.com
We assessed mechanistic temperature influence on flowering by incorporating temperature-
responsive flowering mechanisms across developmental age into an existing model …
responsive flowering mechanisms across developmental age into an existing model …
Photosynthetic entrainment of the circadian clock facilitates plant growth under environmental fluctuations: perspectives from an integrated model of phase oscillator …
Plants need to avoid carbon starvation and resultant growth inhibition under fluctuating light
environments to ensure optimal growth and reproduction. As diel patterns of carbon …
environments to ensure optimal growth and reproduction. As diel patterns of carbon …