Phylogenetic and phylodynamic approaches to understanding and combating the early SARS-CoV-2 pandemic
Determining the transmissibility, prevalence and patterns of movement of severe acute
respiratory syndrome coronavirus 2 (SARS-CoV-2) infections is central to our understanding …
respiratory syndrome coronavirus 2 (SARS-CoV-2) infections is central to our understanding …
Integrating fossil observations into phylogenetics using the fossilized birth–death model
Over the past decade, a new set of methods for estimating dated trees has emerged.
Originally referred to as the fossilized birth–death (FBD) process, this single model has …
Originally referred to as the fossilized birth–death (FBD) process, this single model has …
Studying speciation and extinction dynamics from phylogenies: addressing identifiability issues
A lot of what we know about past speciation and extinction dynamics is based on statistically
fitting birth–death processes to phylogenies of extant species. Despite their wide use, the …
fitting birth–death processes to phylogenies of extant species. Despite their wide use, the …
Epidemiological inference from pathogen genomes: a review of phylodynamic models and applications
LA Featherstone, JM Zhang, TG Vaughan… - Virus …, 2022 - academic.oup.com
Phylodynamics requires an interdisciplinary understanding of phylogenetics, epidemiology,
and statistical inference. It has also experienced more intense application than ever before …
and statistical inference. It has also experienced more intense application than ever before …
Infectious disease phylodynamics with occurrence data
LA Featherstone, F Di Giallonardo… - Methods in Ecology …, 2021 - Wiley Online Library
Phylodynamic models use pathogen genome sequence data to infer epidemiological
dynamics. With the increasing genomic surveillance of pathogens, especially during the …
dynamics. With the increasing genomic surveillance of pathogens, especially during the …
[HTML][HTML] Statistical challenges in tracking the evolution of SARS-CoV-2
Genomic surveillance of SARS-CoV-2 has been instrumental in tracking the spread and
evolution of the virus during the pandemic. The availability of SARS-CoV-2 molecular …
evolution of the virus during the pandemic. The availability of SARS-CoV-2 molecular …
[PDF][PDF] Phylogenetic and phylodynamic approaches to understanding and combating the SARS-CoV-2 pandemic.
Determining the transmissibility, prevalence and patterns of movement of severe acute
respiratory syndrome coronavirus 2 (SARS-CoV-2) infections is central to our understanding …
respiratory syndrome coronavirus 2 (SARS-CoV-2) infections is central to our understanding …