Enhancers as information integration hubs in development: lessons from genomics

C Buecker, J Wysocka - Trends in Genetics, 2012 - cell.com
Transcriptional enhancers are the primary determinants of tissue-specific gene expression.
Although the majority of our current knowledge of enhancer elements comes from detailed …

Limb development: a paradigm of gene regulation

F Petit, KE Sears, N Ahituv - Nature Reviews Genetics, 2017 - nature.com
The limb is a commonly used model system for developmental biology. Given the need for
precise control of complex signalling pathways to achieve proper patterning, the limb is also …

Hox Genes Regulate Digit Patterning by Controlling the Wavelength of a Turing-Type Mechanism

R Sheth, L Marcon, MF Bastida, M Junco, L Quintana… - Science, 2012 - science.org
The formation of repetitive structures (such as stripes) in nature is often consistent with a
reaction-diffusion mechanism, or Turing model, of self-organizing systems. We used mouse …

Next generation limb development and evolution: old questions, new perspectives

A Zuniga - Development, 2015 - journals.biologists.com
The molecular analysis of limb bud development in vertebrates continues to fuel our
understanding of the gene regulatory networks that orchestrate the patterning, proliferation …

[HTML][HTML] Conservation and divergence of regulatory strategies at Hox Loci and the origin of tetrapod digits

JM Woltering, D Noordermeer, M Leleu… - PLoS biology, 2014 - journals.plos.org
During development, expression of the Hoxa and Hoxd genes in zebrafish fins and mouse
limbs are regulated via a conserved chromatin structure. However, zebrafish lack certain …

Deep conservation of wrist and digit enhancers in fish

AR Gehrke, I Schneider… - Proceedings of the …, 2015 - National Acad Sciences
There is no obvious morphological counterpart of the autopod (wrist/ankle and digits) in
living fishes. Comparative molecular data may provide insight into understanding both the …

A conserved Shh cis-regulatory module highlights a common developmental origin of unpaired and paired fins

J Letelier, E De La Calle-Mustienes, J Pieretti… - Nature …, 2018 - nature.com
Despite their evolutionary, developmental and functional importance, the origin of vertebrate
paired appendages remains uncertain. In mice, a single enhancer termed ZRS is solely …

The fin-to-limb transition as the re-organization of a Turing pattern

K Onimaru, L Marcon, M Musy, M Tanaka… - Nature …, 2016 - nature.com
A Turing mechanism implemented by BMP, SOX9 and WNT has been proposed to control
mouse digit patterning. However, its generality and contribution to the morphological …

Coelacanth genomes reveal signatures for evolutionary transition from water to land

M Nikaido, H Noguchi, H Nishihara, A Toyoda… - Genome …, 2013 - genome.cshlp.org
Coelacanths are known as “living fossils,” as they show remarkable morphological
resemblance to the fossil record and belong to the most primitive lineage of living …

Hox gene regulation and timing in embryogenesis

T Montavon, N Soshnikova - Seminars in cell & developmental biology, 2014 - Elsevier
Hox genes are critical regulators of embryonic development in bilaterian animals. They
exhibit a unique mode of transcriptional regulation where the position of the genes along the …