Current challenges and best-practice protocols for microbiome analysis
Analyzing the microbiome of diverse species and environments using next-generation
sequencing techniques has significantly enhanced our understanding on metabolic …
sequencing techniques has significantly enhanced our understanding on metabolic …
Classification of intrinsically disordered regions and proteins
Over the past decade, we have observed a massive increase in the amount of information
describing protein sequences from a variety of organisms. 1, 2 While this may reflect the …
describing protein sequences from a variety of organisms. 1, 2 While this may reflect the …
COVID-19 coronavirus vaccine design using reverse vaccinology and machine learning
To ultimately combat the emerging COVID-19 pandemic, it is desired to develop an effective
and safe vaccine against this highly contagious disease caused by the SARS-CoV-2 …
and safe vaccine against this highly contagious disease caused by the SARS-CoV-2 …
Biological structure and function emerge from scaling unsupervised learning to 250 million protein sequences
In the field of artificial intelligence, a combination of scale in data and model capacity
enabled by unsupervised learning has led to major advances in representation learning and …
enabled by unsupervised learning has led to major advances in representation learning and …
dbNSFP v4: a comprehensive database of transcript-specific functional predictions and annotations for human nonsynonymous and splice-site SNVs
Whole exome sequencing has been increasingly used in human disease studies.
Prioritization based on appropriate functional annotations has been used as an …
Prioritization based on appropriate functional annotations has been used as an …
HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis
IV Kulakovskiy, IE Vorontsov, IS Yevshin… - Nucleic acids …, 2018 - academic.oup.com
We present a major update of the HOCOMOCO collection that consists of patterns
describing DNA binding specificities for human and mouse transcription factors. In this …
describing DNA binding specificities for human and mouse transcription factors. In this …
The nearly complete genome of Ginkgo biloba illuminates gymnosperm evolution
H Liu, X Wang, G Wang, P Cui, S Wu, C Ai, N Hu, A Li… - Nature Plants, 2021 - nature.com
Gymnosperms are a unique lineage of plants that currently lack a high-quality reference
genome due to their large genome size and high repetitive sequence content. Here, we …
genome due to their large genome size and high repetitive sequence content. Here, we …
DeepGOPlus: improved protein function prediction from sequence
M Kulmanov, R Hoehndorf - Bioinformatics, 2020 - academic.oup.com
Motivation Protein function prediction is one of the major tasks of bioinformatics that can help
in wide range of biological problems such as understanding disease mechanisms or finding …
in wide range of biological problems such as understanding disease mechanisms or finding …
The harmonizome: a collection of processed datasets gathered to serve and mine knowledge about genes and proteins
AD Rouillard, GW Gundersen, NF Fernandez… - Database, 2016 - academic.oup.com
Genomics, epigenomics, transcriptomics, proteomics and metabolomics efforts rapidly
generate a plethora of data on the activity and levels of biomolecules within mammalian …
generate a plethora of data on the activity and levels of biomolecules within mammalian …
pH-responsive high stability polymeric nanoparticles for targeted delivery of anticancer therapeutics
L Palanikumar, S Al-Hosani, M Kalmouni… - Communications …, 2020 - nature.com
The practical application of nanoparticles (NPs) as chemotherapeutic drug delivery systems
is often hampered by issues such as poor circulation stability and targeting inefficiency …
is often hampered by issues such as poor circulation stability and targeting inefficiency …