Precision cellular agriculture: The future role of recombinantly expressed protein as food

JH Dupuis, LKY Cheung, L Newman… - … Reviews in Food …, 2023 - Wiley Online Library
Cellular agriculture is a rapidly emerging field, within which cultured meat has attracted the
majority of media attention in recent years. An equally promising area of cellular agriculture …

[HTML][HTML] A review of advances in integrating gene regulatory networks and metabolic networks for designing strain optimization

R Ananda, KM Daud, S Zainudin - … of King Saud University-Computer and …, 2024 - Elsevier
Strain optimization aims to overproduce valuable metabolites by leveraging an
understanding of biological systems, including metabolic networks and gene regulatory …

Regulatory-systemic approach in Aspergillus niger for bioleaching improvement by controlling precipitation

A Naderi, F Vakilchap, E Motamedian… - Applied Microbiology and …, 2023 - Springer
In the context of e-waste recycling by fungal bioleaching, nickel and cobalt precipitate as
toxic metals by oxalic acid, whereas organic acids, such as citric, act as a high-performance …

ACBM: an integrated agent and constraint based modeling framework for simulation of microbial communities

E Karimian, E Motamedian - Scientific Reports, 2020 - nature.com
The development of new methods capable of more realistic modeling of microbial
communities necessitates that their results be quantitatively comparable with experimental …

A system-oriented strategy to enhance electron production of Synechocystis sp. PCC6803 in bio-photovoltaic devices: experimental and modeling insights

H Firoozabadi, MM Mardanpour, E Motamedian - Scientific Reports, 2021 - nature.com
Bio-photovoltaic devices (BPVs) harness photosynthetic organisms to produce bioelectricity
in an eco-friendly way. However, their low energy efficiency is still a challenge. A …

Effect of plasma-induced oxidative stress on the glycolysis pathway of Escherichia coli

S Ranjbar, M Shahmansouri, P Attri… - Computers in Biology and …, 2020 - Elsevier
Antibiotic resistance is one of the world's most urgent public health problems. Due to its
antibacterial properties, cold atmospheric plasma (CAP) may serve as an alternative method …

Improvement of Lutein Production in Auxenochlorella protothecoides Using Its Genome-Scale Metabolic Model and a System-Oriented Approach

M Mekanik, R Fotovat, E Motamedian… - Applied Biochemistry and …, 2023 - Springer
Lutein is a valuable metabolite widely used in the food, pharmaceutical, cosmetic, and
aquaculture industries. Marigold flowers are the most common source of commercial lutein …

Improving ethanol production by studying the effect of pH using a modified metabolic model and a systemic approach

S Ghaffarinasab, E Motamedian - Biotechnology and …, 2021 - Wiley Online Library
Abstract pH is an important factor affecting the growth and production of microorganisms;
especially, its effect on ethanologenic microorganisms. It can change the ionization state of …

Constraint-based modeling and machine learning applications for analysis and optimization of fermentation parameters

MK Khaleghi, ISP Savizi, N Lewis… - Authorea …, 2021 - authorea.com
Recent noteworthy advances in the development of high-performing microbial and
mammalian strains have enabled the sustainable production of bio-economically valuable …