Developmental disorders caused by haploinsufficiency of transcriptional regulators: a perspective based on cell fate determination
R Zug - Biology Open, 2022 - journals.biologists.com
Many human birth defects and neurodevelopmental disorders are caused by loss-of-function
mutations in a single copy of transcription factor (TF) and chromatin regulator genes …
mutations in a single copy of transcription factor (TF) and chromatin regulator genes …
Mapping and dynamics of regulatory DNA and transcription factor networks in A. thaliana
AM Sullivan, AA Arsovski, J Lempe, KL Bubb… - Cell reports, 2014 - cell.com
Our understanding of gene regulation in plants is constrained by our limited knowledge of
plant cis-regulatory DNA and its dynamics. We mapped DNase I hypersensitive sites (DHSs) …
plant cis-regulatory DNA and its dynamics. We mapped DNase I hypersensitive sites (DHSs) …
Holimap: an accurate and efficient method for solving stochastic gene network dynamics
Gene-gene interactions are crucial to the control of sub-cellular processes but our
understanding of their stochastic dynamics is hindered by the lack of simulation methods …
understanding of their stochastic dynamics is hindered by the lack of simulation methods …
The maize SBP-box transcription factor encoded by tasselsheath4 regulates bract development and the establishment of meristem boundaries
Plant architecture consists of repeating units called phytomers, each containing an
internode, leaf and axillary meristem. The formation of boundaries within the phytomer is …
internode, leaf and axillary meristem. The formation of boundaries within the phytomer is …
Decision making in living cells: lessons from a simple system
I Golding - Annual review of biophysics, 2011 - annualreviews.org
The life cycle of bacteriophage lambda serves as a simplified paradigm for cell-fate
decisions. The ongoing quantitative, high-resolution experimental investigation of this life …
decisions. The ongoing quantitative, high-resolution experimental investigation of this life …
CRX ChIP-seq reveals the cis-regulatory architecture of mouse photoreceptors
Approximately 98% of mammalian DNA is noncoding, yet we understand relatively little
about the function of this enigmatic portion of the genome. The cis-regulatory elements that …
about the function of this enigmatic portion of the genome. The cis-regulatory elements that …
Regulation of CHD2 expression by the Chaserr long noncoding RNA gene is essential for viability
A Rom, L Melamed, N Gil, MJ Goldrich, R Kadir… - Nature …, 2019 - nature.com
Chromodomain helicase DNA binding protein 2 (Chd2) is a chromatin remodeller implicated
in neurological disease. Here we show that Chaserr, a highly conserved long noncoding …
in neurological disease. Here we show that Chaserr, a highly conserved long noncoding …
A bistable autoregulatory module in the developing embryo commits cells to binary expression fates
Bistable autoactivation has been proposed as a mechanism for cells to adopt binary fates
during embryonic development. However, it is unclear whether the autoactivating modules …
during embryonic development. However, it is unclear whether the autoactivating modules …
Genome-wide inference reveals that feedback regulations constrain promoter-dependent transcriptional burst kinetics
S Luo, Z Wang, Z Zhang, T Zhou… - Nucleic Acids …, 2023 - academic.oup.com
Gene expression in mammalian cells is highly variable and episodic, resulting in a series of
discontinuous bursts of mRNAs. A challenge is to understand how static promoter …
discontinuous bursts of mRNAs. A challenge is to understand how static promoter …
A small RNA-catalytic argonaute pathway tunes germline transcript levels to ensure embryonic divisions
Multiple division cycles without growth are a characteristic feature of early embryogenesis.
The female germline loads proteins and RNAs into oocytes to support these divisions, which …
The female germline loads proteins and RNAs into oocytes to support these divisions, which …