A roadmap to increase diversity in genomic studies
Two decades ago, the sequence of the first human genome was published. Since then,
advances in genome technologies have resulted in whole-genome sequencing and …
advances in genome technologies have resulted in whole-genome sequencing and …
[HTML][HTML] Natural selection and infectious disease in human populations
EK Karlsson, DP Kwiatkowski, PC Sabeti - Nature Reviews Genetics, 2014 - nature.com
The ancient biological'arms race'between microbial pathogens and humans has shaped
genetic variation in modern populations, and this has important implications for the growing …
genetic variation in modern populations, and this has important implications for the growing …
[HTML][HTML] A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers
MA Quail, M Smith, P Coupland… - BMC …, 2012 - bmcgenomics.biomedcentral.com
Next generation sequencing (NGS) technology has revolutionized genomic and genetic
research. The pace of change in this area is rapid with three major new sequencing …
research. The pace of change in this area is rapid with three major new sequencing …
Genotype imputation with thousands of genomes
Genotype imputation is a statistical technique that is often used to increase the power and
resolution of genetic association studies. Imputation methods work by using haplotype …
resolution of genetic association studies. Imputation methods work by using haplotype …
[HTML][HTML] An open dataset of Plasmodium falciparum genome variation in 7,000 worldwide samples
A Ahouidi, M Ali, J Almagro-Garcia… - Wellcome Open …, 2021 - ncbi.nlm.nih.gov
A major obstacle to malaria elimination is the great capacity of the parasite and vector
populations to evolve in response to malaria control interventions. The widespread use of …
populations to evolve in response to malaria control interventions. The widespread use of …
[HTML][HTML] Microbial genome-wide association studies: lessons from human GWAS
The reduced costs of sequencing have led to whole-genome sequences for a large number
of microorganisms, enabling the application of microbial genome-wide association studies …
of microorganisms, enabling the application of microbial genome-wide association studies …
[HTML][HTML] Global distribution of the sickle cell gene and geographical confirmation of the malaria hypothesis
FB Piel, AP Patil, RE Howes, OA Nyangiri… - Nature …, 2010 - nature.com
It has been 100 years since the first report of sickle haemoglobin (HbS). More than 50 years
ago, it was suggested that the gene responsible for this disorder could reach high …
ago, it was suggested that the gene responsible for this disorder could reach high …
Human genetic susceptibility to infectious disease
SJ Chapman, AVS Hill - Nature Reviews Genetics, 2012 - nature.com
Recent genome-wide studies have reported novel associations between common
polymorphisms and susceptibility to many major infectious diseases in humans. In parallel …
polymorphisms and susceptibility to many major infectious diseases in humans. In parallel …
[HTML][HTML] Population genetics of malaria resistance in humans
PW Hedrick - Heredity, 2011 - nature.com
The high mortality and widespread impact of malaria have resulted in this disease being the
strongest evolutionary selective force in recent human history, and genes that confer …
strongest evolutionary selective force in recent human history, and genes that confer …
[HTML][HTML] Genome-wide and fine-resolution association analysis of malaria in West Africa
We report a genome-wide association (GWA) study of severe malaria in The Gambia. The
initial GWA scan included 2,500 children genotyped on the Affymetrix 500K GeneChip, and …
initial GWA scan included 2,500 children genotyped on the Affymetrix 500K GeneChip, and …