The SOS system: a complex and tightly regulated response to DNA damage

KH Maslowska, K Makiela‐Dzbenska… - Environmental and …, 2019 - Wiley Online Library
Genomes of all living organisms are constantly threatened by endogenous and exogenous
agents that challenge the chemical integrity of DNA. Most bacteria have evolved a …

The E. coli DNA replication fork

JS Lewis, S Jergic, NE Dixon - The Enzymes, 2016 - Elsevier
DNA replication in Escherichia coli initiates at oriC, the origin of replication and proceeds
bidirectionally, resulting in two replication forks that travel in opposite directions from the …

A Genetic Selection for dinB Mutants Reveals an Interaction between DNA Polymerase IV and the Replicative Polymerase That Is Required for Translesion Synthesis

MK Scotland, JMH Heltzel, JE Kath, JS Choi… - PLoS …, 2015 - journals.plos.org
Translesion DNA synthesis (TLS) by specialized DNA polymerases (Pols) is a conserved
mechanism for tolerating replication blocking DNA lesions. The actions of TLS Pols are …

The β2 clamp in the Mycobacterium tuberculosis DNA polymerase III αβ2ε replicase promotes polymerization and reduces exonuclease activity

S Gu, W Li, H Zhang, J Fleming, W Yang, S Wang… - Scientific reports, 2016 - nature.com
Abstract DNA polymerase III (DNA pol III) is a multi-subunit replication machine responsible
for the accurate and rapid replication of bacterial genomes, however, how it functions in …

Coordination and substitution of DNA polymerases in response to genomic obstacles

MA Trakselis, MT Cranford, AM Chu - Chemical research in …, 2017 - ACS Publications
The ability for DNA polymerases (Pols) to overcome a variety of obstacles in its path to
maintain genomic stability during replication is a complex endeavor. It requires the …

Single molecule FRET analysis of DNA binding proteins

KR Chaurasiya, RT Dame - Single Molecule Analysis: Methods and …, 2018 - Springer
The complex binding dynamics between DNA and proteins are often obscured by ensemble
averaging effects in conventional biochemical experiments. Single-molecule fluorescence …

Identification of the dimer exchange Interface of the bacterial DNA damage response protein UmuD

DA Murison, RC Timson, BN Koleva, M Ordazzo… - Biochemistry, 2017 - ACS Publications
The Escherichia coli SOS response, an induced DNA damage response pathway, confers
survival on bacterial cells by providing accurate repair mechanisms as well as the potentially …

Altering the N-terminal arms of the polymerase manager protein UmuD modulates protein interactions

DA Murison, JN Ollivierre, Q Huang, DE Budil… - Plos one, 2017 - journals.plos.org
Escherichia coli cells that are exposed to DNA damaging agents invoke the SOS response
that involves expression of the umuD gene products, along with more than 50 other genes …

Investigations of Dynamic, Higher-Order DNA Polymerase Complexes in Archaea

MT Cranford - 2020 - search.proquest.com
As the blueprint for cellular functions, DNA must be properly maintained and copied.
Exposure to DNA damaging agents leads to formation of genomic lesions which cause …

Structural dynamics and protein interactions within the E. coli DNA polymerase III holoenzyme

JS Lewis - 2017 - ro.uow.edu.au
DNA replication is an essential process that must proceed from start to end without failure.
The Escherichia coli cellular replication machine or “replisome” is composed of a dozen or …