A comparison of immune receptor recombination databases sourced from tumour exome or RNAseq files: Verifications of immunological distinctions between primary …

DN Patel, M Yeagley, JF Arturo… - International Journal …, 2021 - Wiley Online Library
It became apparent several years ago that RNAseq and exome files prepared from tissue
could be mined for adaptive immune receptor (IR) recombinations, which has given extra …

Chemical complementarity between immune receptor CDR3s and candidate cancer antigens correlating with reduced survival: evidence for outcome mitigation with …

AR Patel, DN Patel, YN Tu, M Yeagley… - Journal of …, 2023 - Taylor & Francis
The evaluation of physicochemical characteristics of extensive adaptive immune receptor
(IR) recombination sequence collections has led to the discovery of many correlations of …

Chemical complementarity of breast cancer resident, T-cell receptor CDR3 domains and the cancer antigen, ARMC3, is associated with higher levels of survival and …

N Pakasticali, A Chobrutskiy, DN Patel… - Cancer …, 2023 - journals.sagepub.com
Introduction: One of the most pressing goals for cancer immunotherapy at this time is the
identification of actionable antigens. Methods: This study relies on the following …

TCR CDR3‐antigen chemical complementarity associated with poor ovarian cancer outcomes: A vestigial immune response to early cancer antigens?

VR Barker, M Varkhedi, DN Patel… - American Journal of …, 2023 - Wiley Online Library
Ovarian cancer continues to present significant challenges for early detection and treatment,
indicating a need for novel approaches to improve disease outcomes. In this report, we …

[HTML][HTML] Identification of novel key genes associated with uterine corpus endometrial carcinoma progression and prognosis

H Li, Q Zhou, Z Wu, X Lu - Annals of Translational Medicine, 2023 - ncbi.nlm.nih.gov
Background Uterine corpus endometrial carcinoma (UCEC) is a common malignant cancer
type which affects the health of women worldwide. However, its molecular mechanism has …

Specific TCR V–J gene segment recombinations leading to the identification pan-V–J CDR3s associated with survival distinctions: diffuse large B-cell lymphoma

KJ Cios, TI Huda, RA Eakins, MM Mihyu… - Leukemia & …, 2022 - Taylor & Francis
In the diffuse large B-cell lymphoma (DLBCL) setting, we examined lymph node biopsy, T-
cell receptor features, and the DLBLC patient human leukocyte antigen (HLA) alleles, to …

Blood-based T cell receptor anti-viral CDR3s are associated with worse overall survival for neuroblastoma

DB Kacsoh, MJ Diaz, EC Gozlan, A Sahoo… - Journal of Cancer …, 2023 - Springer
With the advent of large collections of adaptive immune receptor recombination reads
representing cancer, there is the opportunity to further investigate the adaptive immune …

[HTML][HTML] Chemical complementarity of tumor resident, T-cell receptor CDR3s and renalase-1 correlates with increased melanoma survival

S Zaman, FS Gorelick, A Chrobrutskiy… - …, 2024 - pmc.ncbi.nlm.nih.gov
Overexpression of the secretory protein renalase-1 negatively impacts the survival of
melanoma and pancreatic cancer patients, while inhibition of renalase-1 signaling drives …

Electrostatic Complementarities of Glioblastoma-Resident T-Cell Receptors and Cancer Testis Antigens Linked to Poor Outcomes and High Levels of Sphingosine …

MA Arias, KJ Cios, DB Kacsoh, BE Montgomery… - Biology, 2023 - mdpi.com
Simple Summary The chemical complementarity of glioblastoma, tumor-resident T-cell
receptors and cancer testis antigens were associated with a worse outcome. Additionally …

[HTML][HTML] An immunoinformatics assessment of the cancer testis antigen, DDX53, as a potential early esophageal cancer antigen

P Cheng, KJ Cios, M Varkhedi, VR Barker… - …, 2023 - ncbi.nlm.nih.gov
T-lymphocytes have been implicated in facilitating a pro-inflammatory, pro-tumorigenic
microenvironment that worsens prognosis for esophageal carcinoma (ESCA). In this study …