A comparison of immune receptor recombination databases sourced from tumour exome or RNAseq files: Verifications of immunological distinctions between primary …
DN Patel, M Yeagley, JF Arturo… - International Journal …, 2021 - Wiley Online Library
It became apparent several years ago that RNAseq and exome files prepared from tissue
could be mined for adaptive immune receptor (IR) recombinations, which has given extra …
could be mined for adaptive immune receptor (IR) recombinations, which has given extra …
Chemical complementarity between immune receptor CDR3s and candidate cancer antigens correlating with reduced survival: evidence for outcome mitigation with …
AR Patel, DN Patel, YN Tu, M Yeagley… - Journal of …, 2023 - Taylor & Francis
The evaluation of physicochemical characteristics of extensive adaptive immune receptor
(IR) recombination sequence collections has led to the discovery of many correlations of …
(IR) recombination sequence collections has led to the discovery of many correlations of …
Chemical complementarity of breast cancer resident, T-cell receptor CDR3 domains and the cancer antigen, ARMC3, is associated with higher levels of survival and …
N Pakasticali, A Chobrutskiy, DN Patel… - Cancer …, 2023 - journals.sagepub.com
Introduction: One of the most pressing goals for cancer immunotherapy at this time is the
identification of actionable antigens. Methods: This study relies on the following …
identification of actionable antigens. Methods: This study relies on the following …
TCR CDR3‐antigen chemical complementarity associated with poor ovarian cancer outcomes: A vestigial immune response to early cancer antigens?
VR Barker, M Varkhedi, DN Patel… - American Journal of …, 2023 - Wiley Online Library
Ovarian cancer continues to present significant challenges for early detection and treatment,
indicating a need for novel approaches to improve disease outcomes. In this report, we …
indicating a need for novel approaches to improve disease outcomes. In this report, we …
[HTML][HTML] Identification of novel key genes associated with uterine corpus endometrial carcinoma progression and prognosis
H Li, Q Zhou, Z Wu, X Lu - Annals of Translational Medicine, 2023 - ncbi.nlm.nih.gov
Background Uterine corpus endometrial carcinoma (UCEC) is a common malignant cancer
type which affects the health of women worldwide. However, its molecular mechanism has …
type which affects the health of women worldwide. However, its molecular mechanism has …
Specific TCR V–J gene segment recombinations leading to the identification pan-V–J CDR3s associated with survival distinctions: diffuse large B-cell lymphoma
KJ Cios, TI Huda, RA Eakins, MM Mihyu… - Leukemia & …, 2022 - Taylor & Francis
In the diffuse large B-cell lymphoma (DLBCL) setting, we examined lymph node biopsy, T-
cell receptor features, and the DLBLC patient human leukocyte antigen (HLA) alleles, to …
cell receptor features, and the DLBLC patient human leukocyte antigen (HLA) alleles, to …
Blood-based T cell receptor anti-viral CDR3s are associated with worse overall survival for neuroblastoma
With the advent of large collections of adaptive immune receptor recombination reads
representing cancer, there is the opportunity to further investigate the adaptive immune …
representing cancer, there is the opportunity to further investigate the adaptive immune …
[HTML][HTML] Chemical complementarity of tumor resident, T-cell receptor CDR3s and renalase-1 correlates with increased melanoma survival
S Zaman, FS Gorelick, A Chrobrutskiy… - …, 2024 - pmc.ncbi.nlm.nih.gov
Overexpression of the secretory protein renalase-1 negatively impacts the survival of
melanoma and pancreatic cancer patients, while inhibition of renalase-1 signaling drives …
melanoma and pancreatic cancer patients, while inhibition of renalase-1 signaling drives …
Electrostatic Complementarities of Glioblastoma-Resident T-Cell Receptors and Cancer Testis Antigens Linked to Poor Outcomes and High Levels of Sphingosine …
MA Arias, KJ Cios, DB Kacsoh, BE Montgomery… - Biology, 2023 - mdpi.com
Simple Summary The chemical complementarity of glioblastoma, tumor-resident T-cell
receptors and cancer testis antigens were associated with a worse outcome. Additionally …
receptors and cancer testis antigens were associated with a worse outcome. Additionally …
[HTML][HTML] An immunoinformatics assessment of the cancer testis antigen, DDX53, as a potential early esophageal cancer antigen
P Cheng, KJ Cios, M Varkhedi, VR Barker… - …, 2023 - ncbi.nlm.nih.gov
T-lymphocytes have been implicated in facilitating a pro-inflammatory, pro-tumorigenic
microenvironment that worsens prognosis for esophageal carcinoma (ESCA). In this study …
microenvironment that worsens prognosis for esophageal carcinoma (ESCA). In this study …