[HTML][HTML] Microbial interactions in theory and practice: when are measurements compatible with models?

A Picot, S Shibasaki, OJ Meacock, S Mitri - Current Opinion in Microbiology, 2023 - Elsevier
Most predictive models of ecosystem dynamics are based on interactions between
organisms: their influence on each other's growth and death. We review here how …

Engineering Microbial Consortia as Living Materials: Advances and Prospectives

S Wang, Y Zhan, X Jiang, Y Lai - ACS Synthetic Biology, 2024 - ACS Publications
The field of Engineered Living Materials (ELMs) integrates engineered living organisms into
natural biomaterials to achieve diverse objectives. Multiorganism consortia, prevalent in …

Metabolic picture of microbial interaction: chemical crosstalk during co-cultivation between three dominant genera of bacteria and fungi in medicinal plants …

MM Zohair, W Dongmei, K Shimizu - Metabolomics, 2024 - Springer
Introduction Microbial communities affect several aspects of the earth's ecosystem through
their metabolic interaction. The dynamics of this interaction emerge from complex multilevel …

Genome-scale community modelling reveals conserved metabolic cross-feedings in epipelagic bacterioplankton communities

N Giordano, M Gaudin, C Trottier, E Delage… - Nature …, 2024 - nature.com
Marine microorganisms form complex communities of interacting organisms that influence
central ecosystem functions in the ocean such as primary production and nutrient cycling …

Bridging systems biology and tissue engineering: Unleashing the full potential of complex 3D in vitro tissue models of disease

JL Cadavid, NT Li, AP McGuigan - Biophysics Reviews, 2024 - pubs.aip.org
Rapid advances in tissue engineering have resulted in more complex and physiologically
relevant 3D in vitro tissue models with applications in fundamental biology and therapeutic …

[HTML][HTML] A Review on the Interaction of Acetic Acid Bacteria and Microbes in Food Fermentation: A Microbial Ecology Perspective

D Han, Y Yang, Z Guo, S Dai, M Jiang, Y Zhu, Y Wang… - Foods, 2024 - mdpi.com
In fermented foods, acetic acid bacteria (AAB), kinds of bacteria with a long history of
utilization, contribute to safety, nutritional, and sensory properties primarily through acetic …

Culturing the unculturables: strategies, challenges, and opportunities for gut microbiome study

A Yadav, S Ahlawat, KK Sharma - Journal of Applied …, 2023 - academic.oup.com
Metagenome sequencing techniques revolutionized the field of gut microbiome study.
However, it is equipped with experimental and computational biases, which affect the …

Modeling Microbial Community Networks: Methods and Tools for Studying Microbial Interactions

S Srinivasan, A Jnana, TS Murali - Microbial Ecology, 2024 - Springer
Microbial interactions function as a fundamental unit in complex ecosystems. By
characterizing the type of interaction (positive, negative, neutral) occurring in these dynamic …

Searching for principles of microbial ecology across levels of biological organization

M Gralka - Integrative and Comparative Biology, 2023 - academic.oup.com
Microbial communities play pivotal roles in ecosystems across different scales, from global
elemental cycles to household food fermentations. These complex assemblies comprise …

[HTML][HTML] Guild and niche determination enable targeted alteration of the microbiome

O Moyne, M Al-Bassam, C Lieng, D Thiruppathy… - BioRxiv, 2023 - ncbi.nlm.nih.gov
Microbiome science has greatly contributed to our understanding of microbial life and its
essential roles for the environment and human health 1–5. However, the nature of microbial …