Boosting the full potential of PyMOL with structural biology plugins
S Rosignoli, A Paiardini - Biomolecules, 2022 - mdpi.com
Over the past few decades, the number of available structural bioinformatics pipelines,
libraries, plugins, web resources and software has increased exponentially and become …
libraries, plugins, web resources and software has increased exponentially and become …
[HTML][HTML] CHAPERONg: A tool for automated GROMACS-based molecular dynamics simulations and trajectory analyses
Molecular dynamics (MD) simulation is a powerful computational tool used in biomolecular
studies to investigate the dynamics, energetics, and interactions of a wide range of …
studies to investigate the dynamics, energetics, and interactions of a wide range of …
Visual dynamics: a WEB application for molecular dynamics simulation using GROMACS
IHP Vieira, EB Botelho, TJ de Souza Gomes, R Kist… - BMC …, 2023 - Springer
Background The molecular dynamics is an approach to obtain kinetic and thermodynamic
characteristics of biomolecular structures. The molecular dynamics simulation softwares are …
characteristics of biomolecular structures. The molecular dynamics simulation softwares are …
Resources and methods for engineering “designer” glycan-binding proteins
R Warkentin, DH Kwan - Molecules, 2021 - mdpi.com
This review provides information on available methods for engineering glycan-binding
proteins (GBP). Glycans are involved in a variety of physiological functions and are found in …
proteins (GBP). Glycans are involved in a variety of physiological functions and are found in …
Discovery of potent heat shock protein 90 (Hsp90) inhibitors: structure-based virtual screening, molecular dynamics simulation, and biological evaluation
Y Xu, Y Zou, S Zhou, MM Niu, Y Zhang, J Li… - Journal of Enzyme …, 2023 - Taylor & Francis
Abstract Heat shock protein 90 (Hsp90) is considered an attractive therapeutic target for
cancer treatment due to its high expression in many cancers. In this study, four potent Hsp90 …
cancer treatment due to its high expression in many cancers. In this study, four potent Hsp90 …
Dual-targeting cyclic peptides of receptor-binding domain (RBD) and main protease (Mpro) as potential drug leads for the treatment of SARS-CoV-2 infection
Z Xu, Y Zou, X Gao, MM Niu, J Li, L Xue… - Frontiers in …, 2022 - frontiersin.org
The receptor-binding domain (RBD) and the main protease (Mpro) of severe acute
respiratory syndrome coronavirus 2 (SARS-CoV-2) play a crucial role in the entry and …
respiratory syndrome coronavirus 2 (SARS-CoV-2) play a crucial role in the entry and …
A novel thymidine phosphorylase to synthesize (halogenated) anticancer and antiviral nucleoside drugs in continuous flow
AI Benítez-Mateos, C Klein, DR Padrosa… - Catalysis science & …, 2022 - pubs.rsc.org
Four pharmaceutically relevant nucleoside analogues (5-fluoro-2′-deoxyuridine, 5-chloro-
2′-deoxyuridine, 5-bromo-2′-deoxyuridine, and 5-iodo-2′-deoxyuridine) have been …
2′-deoxyuridine, 5-bromo-2′-deoxyuridine, and 5-iodo-2′-deoxyuridine) have been …
The role of cytochrome P450 AbyV in the final stages of abyssomicin C biosynthesis
AJ Devine, AE Parnell, CR Back… - Angewandte Chemie …, 2023 - Wiley Online Library
Abyssomicin C and its atropisomer are potent inhibitors of bacterial folate metabolism. They
possess complex polycyclic structures, and their biosynthesis has been shown to involve …
possess complex polycyclic structures, and their biosynthesis has been shown to involve …
Multi-gram preparation of cinnamoyl tryptamines as skin whitening agents through a chemo-enzymatic flow process
DR Padrosa, ML Contente - Tetrahedron Letters, 2021 - Elsevier
A 2-step flow-based chemo-enzymatic synthesis of selected cinnamoyl tryptamines as
potential cosmetic ingredients has been developed. A first reaction catalyzed by immobilized …
potential cosmetic ingredients has been developed. A first reaction catalyzed by immobilized …
Calcus: An open-source quantum chemistry web platform
R Robidas, CY Legault - Journal of Chemical Information and …, 2022 - ACS Publications
Computational chemistry is an increasingly active field due to the improvement of computing
resources and theoretical tools. However, its use remains usually limited to technically …
resources and theoretical tools. However, its use remains usually limited to technically …