Web-based multi-omics integration using the analyst software suite

JD Ewald, G Zhou, Y Lu, J Kolic, C Ellis, JD Johnson… - Nature …, 2024 - nature.com
The growing number of multi-omics studies demands clear conceptual workflows coupled
with easy-to-use software tools to facilitate data analysis and interpretation. This protocol …

MetaboAnalyst 6.0: towards a unified platform for metabolomics data processing, analysis and interpretation

Z Pang, Y Lu, G Zhou, F Hui, L Xu, C Viau… - Nucleic Acids …, 2024 - academic.oup.com
We introduce MetaboAnalyst version 6.0 as a unified platform for processing, analyzing, and
interpreting data from targeted as well as untargeted metabolomics studies using liquid …

Evaluating machine learning methods of analyzing multiclass metabolomics

Y Gong, W Ding, P Wang, Q Wu, X Yao… - Journal of Chemical …, 2023 - ACS Publications
Multiclass metabolomic studies have become popular for revealing the differences in
multiple stages of complex diseases, various lifestyles, or the effects of specific treatments. In …

MetaboAnalystR 4.0: a unified LC-MS workflow for global metabolomics

Z Pang, L Xu, C Viau, Y Lu, R Salavati, N Basu… - Nature …, 2024 - nature.com
The wide applications of liquid chromatography-mass spectrometry (LC-MS) in untargeted
metabolomics demand an easy-to-use, comprehensive computational workflow to support …

A sample-centric and knowledge-driven computational framework for natural products drug discovery

A Gaudry, M Pagni, F Mehl, S Moretti… - 2024 - ACS Publications
A Sample-Centric and Knowledge-Driven Computational Framework for Natural Products Drug
Discovery | ACS Central Science ACS ACS Publications C&EN CAS Find my institution Log In …

Methylprednisolone therapy induces differential metabolic trajectories in severe COVID-19 patients

VI Mwangi, RLA Netto, MGS Borba, GF Santos… - Msystems, 2023 - Am Soc Microbiol
Corticosteroids have become a choice for managing severe COVID-19, but the molecular
mechanisms behind the response after corticosteroid administration remain incompletely …

Generalized tree structure to annotate untargeted metabolomics and stable isotope tracing data

S Li, S Zheng - Analytical chemistry, 2023 - ACS Publications
In untargeted metabolomics, multiple ions are often measured for each original metabolite,
including isotopic forms and in-source modifications, such as adducts and fragments …

Scaling-up metabolomics: Current state and perspectives

G Hajjar, MCB Santos, J Bertrand-Michel… - TrAC Trends in …, 2023 - Elsevier
Metabolomics is now a mature phenotyping tool that provides substantial results within
various scientific communities. Its application at large-scale, ie on large populations and/or …

Harmonized quality assurance/quality control provisions to assess completeness and robustness of MS1 data preprocessing for LC-HRMS-based suspect screening …

S Lennon, J Chaker, EJ Price, J Hollender… - TrAC Trends in …, 2024 - Elsevier
Non-targeted and suspect screening analysis using liquid chromatography coupled to high-
resolution mass spectrometry (LC-HRMS) holds great promise to comprehensively …

High-Resolution Mass Spectrometry for Human Exposomics: Expanding Chemical Space Coverage

Y Lai, JP Koelmel, DI Walker, EJ Price… - Environmental …, 2024 - ACS Publications
In the modern “omics” era, measurement of the human exposome is a critical missing link
between genetic drivers and disease outcomes. High-resolution mass spectrometry …