Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza

JC Stein, Y Yu, D Copetti, DJ Zwickl, L Zhang… - Nature …, 2018 - nature.com
The genus Oryza is a model system for the study of molecular evolution over time scales
ranging from a few thousand to 15 million years. Using 13 reference genomes spanning the …

Can the Wild Perennial, Rhizomatous Rice Species Oryza longistaminata be a Candidate for De Novo Domestication?

S Tong, M Ashikari, K Nagai, O Pedersen - Rice, 2023 - Springer
As climate change intensifies, the development of resilient rice that can tolerate abiotic
stresses is urgently needed. In nature, many wild plants have evolved a variety of …

Expanding frontiers in plant transcriptomics in aid of functional genomics and molecular breeding

P Agarwal, SK Parida, A Mahto, S Das… - Biotechnology …, 2014 - Wiley Online Library
The transcript pool of a plant part, under any given condition, is a collection of mRNAs that
will pave the way for a biochemical reaction of the plant to stimuli. Over the past decades …

The response of Chlamydomonas reinhardtii to nitrogen deprivation: a systems biology analysis

JJ Park, H Wang, M Gargouri, RR Deshpande… - The Plant …, 2015 - Wiley Online Library
Drastic alteration in macronutrients causes large changes in gene expression in the
photosynthetic unicellular alga Chlamydomonas reinhardtii. Preliminary data suggested that …

Identification of regulatory network hubs that control lipid metabolism in Chlamydomonas reinhardtii

M Gargouri, JJ Park, FO Holguin, MJ Kim… - Journal of …, 2015 - academic.oup.com
Microalgae-based biofuels are promising sources of alternative energy, but improvements
throughout the production process are required to establish them as economically feasible …

Strategies and Structure Feature of the Aboveground and Belowground Microbial Community Respond to Drought in Wild Rice (Oryza longistaminata)

J Xie, X Wang, J Xu, H Xie, Y Cai, Y Liu, X Ding - Rice, 2021 - Springer
Background Drought is global environmental stress that limits crop yields. Plant-associated
microbiomes play a crucial role in determining plant fitness in response to drought, yet the …

[HTML][HTML] Development and identification of novel rice blast resistant sources and their characterization using molecular markers

SJSR Devi, K Singh, B Umakanth, B Vishalakshi… - Rice Science, 2015 - Elsevier
To develop and characterize introgression lines for leaf and neck blast resistance, 326
introgression lines were developed using various accessions of six different AA genome …

Assembling the genome of the African wild rice Oryza longistaminata by exploiting synteny in closely related Oryza species

S Reuscher, T Furuta, K Bessho-Uehara… - Communications …, 2018 - nature.com
The African wild rice species Oryza longistaminata has several beneficial traits compared to
cultivated rice species, such as resistance to biotic stresses, clonal propagation via …

Genome and comparative transcriptomics of African wild rice Oryza longistaminata provide insights into molecular mechanism of rhizomatousness and self …

Y Zhang, S Zhang, H Liu, B Fu, L Li, M Xie, Y Song, X Li… - Molecular plant, 2015 - cell.com
Oryza longistaminata is an African wild rice species with AA genome type possessing
special traits that are highly valued for improving cultivated rice, such as strong resistance to …

The chrysanthemum DEAD-box RNA helicase CmRH56 regulates rhizome outgrowth in response to drought stress

L Zhang, Y Xu, X Liu, M Qin, S Li, T Jiang… - Journal of …, 2022 - academic.oup.com
Plants have evolved complex mechanisms to reprogram growth in response to drought
stress. In herbaceous perennial plant species, the rhizome, which is normally an organ for …