Protein–Protein Interaction Network Exploration Using Cytoscape
A Majeed, S Mukhtar - Protein-Protein Interactions: Methods and Protocols, 2023 - Springer
As the protein–protein interaction (PPI) data increase exponentially, the development and
usage of computational methods to analyze these datasets have become a new research …
usage of computational methods to analyze these datasets have become a new research …
Computational models for prediction of protein–protein interaction in rice and Magnaporthe grisea
Introduction Plant–microbe interactions play a vital role in the development of strategies to
manage pathogen-induced destructive diseases that cause enormous crop losses every …
manage pathogen-induced destructive diseases that cause enormous crop losses every …
Phosphorylation Dynamics in a flg22-Induced, G Protein–Dependent Network Reveals the AtRGS1 Phosphatase
The microbe-associated molecular pattern flg22 is recognized in a flagellin-sensitive 2–
dependent manner in root tip cells. Here, we show a rapid and massive change in protein …
dependent manner in root tip cells. Here, we show a rapid and massive change in protein …
Integrated Systems Biology Pipeline to Compare Co-Expression Networks in Plants and Elucidate Differential Regulators
N Kumar, MS Mukhtar - Plants, 2023 - mdpi.com
To identify sets of genes that exhibit similar expression characteristics, co-expression
networks were constructed from transcriptome datasets that were obtained from plant …
networks were constructed from transcriptome datasets that were obtained from plant …
Building Protein–Protein Interaction Graph Database Using Neo4j
A cell's various components interact with each other in a coordinated manner to respond to
environmental cues and intracellular signals. Compared to the other biological networks, the …
environmental cues and intracellular signals. Compared to the other biological networks, the …
Cytotrap: an innovative approach for protein–protein interaction studies for cytoplasmic proteins
B Mohan, D Thingujam… - … Interactions: Methods and …, 2023 - Springer
Protein–protein interaction mapping has gained immense importance in understanding
protein functions in diverse biological pathways. There are various in vivo and in vitro …
protein functions in diverse biological pathways. There are various in vivo and in vitro …
Protein–Protein Interaction Network Analysis Using NetworkX
In recent years, extracting information from biological data has become a particularly
valuable way of gaining knowledge. Molecular interaction networks provide a framework for …
valuable way of gaining knowledge. Molecular interaction networks provide a framework for …
Dynamic Enrichment for Evaluation of Protein Networks (DEEPN): A High Throughput Yeast Two-Hybrid (Y2H) Protocol to Evaluate Networks
Proteins are the building blocks of life, and a vast array of cellular processes is handled by
protein–protein interactions (PPIs). The protein complexes formed via PPIs lead to tangled …
protein–protein interactions (PPIs). The protein complexes formed via PPIs lead to tangled …
Preparation and Utilization of a Versatile GFP-Protein Trap-Like System for Protein Complex Immunoprecipitation in Plants
D Diwan, KM Pajerowska-Mukhtar - Protein-Protein Interactions: Methods …, 2023 - Springer
Protein complex immunoprecipitation (co-IP) is an in vitro technique used to study protein–
protein interaction between two or more proteins. This method relies on affinity purification of …
protein interaction between two or more proteins. This method relies on affinity purification of …
The ER Stress-Pathogen Nexus in Regulation of Cell Death in Arabidopsis Immunity
DGH Diwan - 2023 - search.proquest.com
Pathogens and plants are involved in a coevolutionary battle for dominance. As plants lack
adaptive immune systems, they rely on their innate immunity to protect themselves from …
adaptive immune systems, they rely on their innate immunity to protect themselves from …