iPromoter-2L: a two-layer predictor for identifying promoters and their types by multi-window-based PseKNC
B Liu, F Yang, DS Huang, KC Chou - Bioinformatics, 2018 - academic.oup.com
Motivation Being responsible for initiating transaction of a particular gene in genome,
promoter is a short region of DNA. Promoters have various types with different functions …
promoter is a short region of DNA. Promoters have various types with different functions …
Critical assessment of computational tools for prokaryotic and eukaryotic promoter prediction
Promoters are crucial regulatory DNA regions for gene transcriptional activation. Rapid
advances in next-generation sequencing technologies have accelerated the accumulation …
advances in next-generation sequencing technologies have accelerated the accumulation …
iPro54-PseKNC: a sequence-based predictor for identifying sigma-54 promoters in prokaryote with pseudo k-tuple nucleotide composition
The σ54 promoters are unique in prokaryotic genome and responsible for transcripting
carbon and nitrogen-related genes. With the avalanche of genome sequences generated in …
carbon and nitrogen-related genes. With the avalanche of genome sequences generated in …
A survey of biological data in a big data perspective
The amount of available data is continuously growing. This phenomenon promotes a new
concept, named big data. The highlight technologies related to big data are cloud computing …
concept, named big data. The highlight technologies related to big data are cloud computing …
MULTiPly: a novel multi-layer predictor for discovering general and specific types of promoters
Motivation Promoters are short DNA consensus sequences that are localized proximal to the
transcription start sites of genes, allowing transcription initiation of particular genes …
transcription start sites of genes, allowing transcription initiation of particular genes …
Classifying promoters by interpreting the hidden information of DNA sequences via deep learning and combination of continuous fasttext N-grams
A promoter is a short region of DNA (100–1,000 bp) where transcription of a gene by RNA
polymerase begins. It is typically located directly upstream or at the 5′ end of the …
polymerase begins. It is typically located directly upstream or at the 5′ end of the …
Computational prediction and interpretation of both general and specific types of promoters in Escherichia coli by exploiting a stacked ensemble-learning framework
Promoters are short consensus sequences of DNA, which are responsible for transcription
activation or the repression of all genes. There are many types of promoters in bacteria with …
activation or the repression of all genes. There are many types of promoters in bacteria with …
[HTML][HTML] iPSW (2L)-PseKNC: A two-layer predictor for identifying promoters and their strength by hybrid features via pseudo K-tuple nucleotide composition
The promoter is a regulatory DNA region about 81–1000 base pairs long, usually located
near the transcription start site (TSS) along upstream of a given gene. By combining a …
near the transcription start site (TSS) along upstream of a given gene. By combining a …
iPromoter-BnCNN: a novel branched CNN-based predictor for identifying and classifying sigma promoters
Motivation Promoter is a short region of DNA which is responsible for initiating transcription
of specific genes. Development of computational tools for automatic identification of …
of specific genes. Development of computational tools for automatic identification of …
pcPromoter-CNN: a CNN-based prediction and classification of promoters
A promoter is a small region within the DNA structure that has an important role in initiating
transcription of a specific gene in the genome. Different types of promoters are recognized …
transcription of a specific gene in the genome. Different types of promoters are recognized …