A review of independent component analysis application to microarray gene expression data

W Kong, CR Vanderburg, H Gunshin, JT Rogers… - …, 2008 - Taylor & Francis
Independent component analysis (ICA) methods have received growing attention as
effective data-mining tools for microarray gene expression data. As a technique of higher …

Independent component analysis-based penalized discriminant method for tumor classification using gene expression data

DS Huang, CH Zheng - Bioinformatics, 2006 - academic.oup.com
Motivation: Microarrays are capable of determining the expression levels of thousands of
genes simultaneously. One important application of gene expression data is classification of …

Independent component analysis of Alzheimer's DNA microarray gene expression data

W Kong, X Mou, Q Liu, Z Chen, CR Vanderburg… - Molecular …, 2009 - Springer
Background Gene microarray technology is an effective tool to investigate the simultaneous
activity of multiple cellular pathways from hundreds to thousands of genes. However …

Blind source separation and the analysis of microarray data

P Chiappetta, MC Roubaud… - Journal of Computational …, 2004 - liebertpub.com
We develop an approach for the exploratory analysis of gene expression data, based upon
blind source separation techniques. This approach exploits higher-order statistics to identify …

[PDF][PDF] Variational message passing and its applications

JM Winn - 2004 - johnwinn.org.serval.mythic-beasts …
This thesis is concerned with the development of Variational Message Passing (VMP), an
algorithm for automatically performing variational inference in a probabilistic graphical …

Gene expression data classification using consensus independent component analysis

CH Zheng, DS Huang, XZ Kong… - Genomics, Proteomics …, 2008 - academic.oup.com
We propose a new method for tumor classification from gene expression data, which mainly
contains three steps. Firstly, the original DNA microarray gene expression data are modeled …

Exploring matrix factorization techniques for significant genes identification of Alzheimer's disease microarray gene expression data

W Kong, X Mou, X Hu - BMC bioinformatics, 2011 - Springer
Background The wide use of high-throughput DNA microarray technology provide an
increasingly detailed view of human transcriptome from hundreds to thousands of genes …

Methods and systems for gene expression array analysis

K Najarian - US Patent 6,996,476, 2006 - Google Patents
Disclosed are methods and Systems for applying indepen dent component analysis (ICA)
and other advanced signal processing techniques to automatically identify an optimal …

Incremental hybrid approach for microarray classification

MA Wani - 2008 Seventh International Conference on Machine …, 2008 - ieeexplore.ieee.org
The work presented in this paper describes an incremental hybrid approach that employs
principal component analysis (PCA) and multiple discriminant analysis (MDA) methods for …

Knowledge-guided multi-scale independent component analysis for biomarker identification

L Chen, J Xuan, C Wang, IM Shih, Y Wang, Z Zhang… - BMC …, 2008 - Springer
Background Many statistical methods have been proposed to identify disease biomarkers
from gene expression profiles. However, from gene expression profile data alone, statistical …