[HTML][HTML] Genotyping-by-sequencing (GBS), an ultimate marker-assisted selection (MAS) tool to accelerate plant breeding

J He, X Zhao, A Laroche, ZX Lu, HK Liu… - Frontiers in plant …, 2014 - frontiersin.org
Marker-assisted selection (MAS) refers to the use of molecular markers to assist phenotypic
selections in crop improvement. Several types of molecular markers, such as single …

Field guide to next‐generation DNA sequencers

TC Glenn - Molecular ecology resources, 2011 - Wiley Online Library
The diversity of available 2nd and 3rd generation DNA sequencing platforms is increasing
rapidly. Costs for these systems range from< 100000tomorethan 1 000 000, with instrument …

A chemical genetic roadmap to improved tomato flavor

D Tieman, G Zhu, MFR Resende Jr, T Lin, C Nguyen… - Science, 2017 - science.org
Modern commercial tomato varieties are substantially less flavorful than heirloom varieties.
To understand and ultimately correct this deficiency, we quantified flavor-associated …

[HTML][HTML] Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

BK Peterson, JN Weber, EH Kay, HS Fisher… - PloS one, 2012 - journals.plos.org
The ability to efficiently and accurately determine genotypes is a keystone technology in
modern genetics, crucial to studies ranging from clinical diagnostics, to genotype-phenotype …

[HTML][HTML] A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species

RJ Elshire, JC Glaubitz, Q Sun, JA Poland… - PloS one, 2011 - journals.plos.org
Advances in next generation technologies have driven the costs of DNA sequencing down
to the point that genotyping-by-sequencing (GBS) is now feasible for high diversity, large …

Genotyping‐by‐sequencing for plant breeding and genetics

JA Poland, TW Rife - The plant genome, 2012 - Wiley Online Library
Rapid advances in “next‐generation” DNA sequencing technology have brought the US
$1000 human (Homo sapiens) genome within reach while providing the raw sequencing …

Partial uracil–DNA–glycosylase treatment for screening of ancient DNA

N Rohland, E Harney, S Mallick… - … Transactions of the …, 2015 - royalsocietypublishing.org
The challenge of sequencing ancient DNA has led to the development of specialized
laboratory protocols that have focused on reducing contamination and maximizing the …

Cost-effective, high-throughput DNA sequencing libraries for multiplexed target capture

N Rohland, D Reich - Genome research, 2012 - genome.cshlp.org
Improvements in technology have reduced the cost of DNA sequencing to the point that the
limiting factor for many experiments is the time and reagent cost of sample preparation. We …

Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform

M Kircher, S Sawyer, M Meyer - Nucleic acids research, 2012 - academic.oup.com
Due to the increasing throughput of current DNA sequencing instruments, sample
multiplexing is necessary for making economical use of available sequencing capacities. A …

Detection and quantification of rare mutations with massively parallel sequencing

I Kinde, J Wu, N Papadopoulos… - Proceedings of the …, 2011 - National Acad Sciences
The identification of mutations that are present in a small fraction of DNA templates is
essential for progress in several areas of biomedical research. Although massively parallel …