Building a FAIR image data ecosystem for microscopy communities

I Kemmer, A Keppler, B Serrano-Solano… - Histochemistry and Cell …, 2023 - Springer
Bioimaging has now entered the era of big data with faster-than-ever development of
complex microscopy technologies leading to increasingly complex datasets. This enormous …

Big data in contemporary electron microscopy: challenges and opportunities in data transfer, compute and management

D Poger, L Yen, F Braet - Histochemistry and Cell Biology, 2023 - Springer
The second decade of the twenty-first century witnessed a new challenge in the handling of
microscopy data. Big data, data deluge, large data, data compliance, data analytics, data …

MITI minimum information guidelines for highly multiplexed tissue images

D Schapiro, C Yapp, A Sokolov, SM Reynolds… - Nature …, 2022 - nature.com
The imminent release of tissue atlases combining multichannel microscopy with single-cell
sequencing and other omics data from normal and diseased specimens creates an urgent …

Synergistic pharmacological therapy to modulate glial cells in spinal cord injury

V Veneruso, E Petillo, F Pizzetti, A Orro… - Advanced …, 2024 - Wiley Online Library
Current treatments for modulating the glial‐mediated inflammatory response after spinal
cord injury (SCI) have limited ability to improve recovery. This is quite likely due to the lack of …

Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model

M Hammer, M Huisman, A Rigano, U Boehm… - Nature …, 2021 - nature.com
Rigorous record-keeping and quality control are required to ensure the quality,
reproducibility and value of imaging data. The 4DN Initiative and BINA here propose light …

Micro-Meta App: an interactive tool for collecting microscopy metadata based on community specifications

A Rigano, S Ehmsen, SU Öztürk, J Ryan, A Balashov… - Nature …, 2021 - nature.com
For quality, interpretation, reproducibility and sharing value, microscopy images should be
accompanied by detailed descriptions of the conditions that were used to produce them …

Microscopy-BIDS: an extension to the brain imaging data structure for microscopy data

MH Bourget, L Kamentsky, SS Ghosh… - Frontiers in …, 2022 - frontiersin.org
The Brain Imaging Data Structure (BIDS) is a specification for organizing, sharing, and
archiving neuroimaging data and metadata in a reusable way. First developed for magnetic …

Harmonizing the generation and pre-publication stewardship of FAIR image data

N Bialy, F Alber, B Andrews, M Angelo… - arXiv preprint arXiv …, 2024 - arxiv.org
Together with the molecular knowledge of genes and proteins, biological images promise to
significantly enhance the scientific understanding of complex cellular systems and to …

Setting up a data management infrastructure for bioimaging

S Kunis, K Bernhardt, M Hensel - Biological Chemistry, 2023 - degruyter.com
While the FAIR (F indable, A ccessible, I nteroperable, and R e-usable) principles are well
accepted in the scientific community, there are still many challenges in implementing them in …

Enabling global image data sharing in the life sciences

P Bajcsy, S Bhattiprolu, K Borner, B Cimini… - arXiv preprint arXiv …, 2024 - arxiv.org
Coordinated collaboration is essential to realize the added value of and infrastructure
requirements for global image data sharing in the life sciences. In this White Paper, we take …