What macromolecular crowding can do to a protein
IM Kuznetsova, KK Turoverov, VN Uversky - International journal of …, 2014 - mdpi.com
The intracellular environment represents an extremely crowded milieu, with a limited amount
of free water and an almost complete lack of unoccupied space. Obviously, slightly salted …
of free water and an almost complete lack of unoccupied space. Obviously, slightly salted …
Weak chemical interactions that drive protein evolution: crowding, sticking, and quinary structure in folding and function
D Guin, M Gruebele - Chemical reviews, 2019 - ACS Publications
In recent years, better instrumentation and greater computing power have enabled the
imaging of elusive biomolecule dynamics in cells, driving many advances in understanding …
imaging of elusive biomolecule dynamics in cells, driving many advances in understanding …
Size-dependent studies of macromolecular crowding on the thermodynamic stability, structure and functional activity of proteins: in vitro and in silico approaches
Background The environment inside cells in which proteins fold and function are quite
different from that of the dilute buffer solutions often used during in vitro experiments. The …
different from that of the dilute buffer solutions often used during in vitro experiments. The …
Double resolution model for studying TMAO/water effective interactions
L Larini, JE Shea - The Journal of Physical Chemistry B, 2013 - ACS Publications
The structural properties of water molecules surrounding TMAO molecules are studied using
a newly developed atomistic force field for TMAO, combined with a multiscale coarse …
a newly developed atomistic force field for TMAO, combined with a multiscale coarse …
Macromolecular crowding modulates α-synuclein amyloid fiber growth
The crowdedness of living cells, hundreds of milligrams per milliliter of macromolecules,
may affect protein folding, function, and misfolding. Still, such processes are most often …
may affect protein folding, function, and misfolding. Still, such processes are most often …
Effects of macromolecular crowding agents on protein folding in vitro and in silico
Proteins fold and function inside cells which are environments very different from that of
dilute buffer solutions most often used in traditional experiments. The crowded milieu results …
dilute buffer solutions most often used in traditional experiments. The crowded milieu results …
Modeling crowded environment in molecular simulations
Biomolecules perform their various functions in living cells, namely in an environment that is
crowded by many macromolecules. Thus, simulating the dynamics and interactions of …
crowded by many macromolecules. Thus, simulating the dynamics and interactions of …
Cosolutes, crowding, and protein folding kinetics
AH Gorensek-Benitez, AE Smith… - The Journal of …, 2017 - ACS Publications
Long accepted as the most important interaction, recent work shows that steric repulsions
alone cannot explain the effects of macromolecular cosolutes on the equilibrium …
alone cannot explain the effects of macromolecular cosolutes on the equilibrium …
Enhancement of biological reactions on cell surfaces via macromolecular crowding
R Chapanian, DH Kwan, I Constantinescu… - Nature …, 2014 - nature.com
The reaction of macromolecules such as enzymes and antibodies with cell surfaces is often
an inefficient process, requiring large amounts of expensive reagent. Here we report a …
an inefficient process, requiring large amounts of expensive reagent. Here we report a …
Crowded environments tune the fold-switching in metamorphic proteins
N Zhang, W Guan, S Cui, N Ai - Communications Chemistry, 2023 - nature.com
Metamorphic proteins such as circadian clock protein KaiB and human chemokine XCL1
play vital roles in regulating biological processes, including gene expression, circadian …
play vital roles in regulating biological processes, including gene expression, circadian …