The evolutionary dynamics of eukaryotic gene order

LD Hurst, C Pál, MJ Lercher - Nature Reviews Genetics, 2004 - nature.com
In eukaryotes, unlike in bacteria, gene order has typically been assumed to be random.
However, the first statistically rigorous analyses of complete genomes, together with the …

Insertion–deletion biases and the evolution of genome size

TR Gregory - Gene, 2004 - Elsevier
Numerous theories have been proposed to account for the pronounced differences in the
quantity of non-coding DNA among eukaryotic genomes, but the current repertoire remains …

The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation

B Palenik, J Grimwood, A Aerts… - Proceedings of the …, 2007 - National Acad Sciences
The smallest known eukaryotes, at≈ 1-μm diameter, are Ostreococcus tauri and related
species of marine phytoplankton. The genome of Ostreococcus lucimarinus has been …

Genome size evolution in animals

TR Gregory - The evolution of the genome, 2005 - Elsevier
Publisher Summary This chapter focuses on genomic size evolution in animals. There are
many ways of studying the evolution of genome. The chapter looks on the examination of …

Chromosomal rearrangement inferred from comparisons of 12 Drosophila genomes

A Bhutkar, SW Schaeffer, SM Russo, M Xu, TF Smith… - Genetics, 2008 - academic.oup.com
The availability of 12 complete genomes of various species of genus Drosophila provides a
unique opportunity to analyze genome-scale chromosomal rearrangements among a group …

Hierarchical scaffolding with Bambus

M Pop, DS Kosack, SL Salzberg - Genome research, 2004 - genome.cshlp.org
The output of a genome assembler generally comprises a collection of contiguous DNA
sequences (contigs) whose relative placement along the genome is not defined. A …

Principles of genome evolution in the Drosophila melanogaster species group

JM Ranz, D Maurin, YS Chan, M Von Grotthuss… - PLoS …, 2007 - journals.plos.org
That closely related species often differ by chromosomal inversions was discovered by
Sturtevant and Plunkett in 1926. Our knowledge of how these inversions originate is still very …

The Drosophila melanogaster genome

SE Celniker, GM Rubin - Annual review of genomics and human …, 2003 - annualreviews.org
Drosophila's importance as a model organism made it an obvious choice to be among the
first genomes sequenced, and the Release 1 sequence of the euchromatic portion of the …

Inversions and Gene Order Shuffling in Anopheles gambiae and A. funestus

IV Sharakhov, AC Serazin, OG Grushko, A Dana… - Science, 2002 - science.org
In tropical Africa, Anopheles funestus is one of the three most important malaria vectors. We
physically mapped 157 A. funestus complementary DNAs (cDNAs) to the polytene …

A BAC-based integrated linkage map of the silkworm Bombyx mori

K Yamamoto, J Nohata, K Kadono-Okuda, J Narukawa… - Genome biology, 2008 - Springer
Background In 2004, draft sequences of the model lepidopteran Bombyx mori were reported
using whole-genome shotgun sequencing. Because of relatively shallow genome coverage …