Mass spectrometry‐based tear proteomics for noninvasive biomarker discovery

E Ponzini, C Santambrogio, A De Palma… - Mass Spectrometry …, 2022 - Wiley Online Library
The lacrimal film has attracted increasing interest in the last decades as a potential source of
biomarkers of physiopathological states, due to its accessibility, moderate complexity, and …

Phosphopeptide enrichment for phosphoproteomic analysis-a tutorial and review of novel materials

W Qiu, CA Evans, A Landels, TK Pham, PC Wright - Analytica chimica acta, 2020 - Elsevier
Significant technical advancements in phosphopeptide enrichment have enabled the
identification of thousands of p-peptides (mono and multiply phosphorylated) in a single …

Protein contaminants matter: building universal protein contaminant libraries for DDA and DIA proteomics

AM Frankenfield, J Ni, M Ahmed… - Journal of proteome …, 2022 - ACS Publications
Mass spectrometry-based proteomics is constantly challenged by the presence of
contaminant background signals. In particular, protein contaminants from reagents and …

Optimized approaches for quantification of drug transporters in tissues and cells by MRM proteomics

B Prasad, JD Unadkat - The AAPS journal, 2014 - Springer
Drug transporter expression in tissues (in vivo) usually differs from that in cell lines used to
measure transporter activity (in vitro). Therefore, quantification of transporter expression in …

Investigation of the global protein content from healthy human tears

M Dor, S Eperon, PH Lalive, Y Guex-Crosier… - Experimental eye …, 2019 - Elsevier
Considering absence of invasiveness and side effects, tears emerge as a particularly
attractive fluid for biomarker discovery and therefore for daily clinical use. However, to date …

Detergent-assisted protein digestion—On the way to avoid the key bottleneck of shotgun bottom-up proteomics

K Danko, E Lukasheva, VA Zhukov, V Zgoda… - International Journal of …, 2022 - mdpi.com
Gel-free bottom-up shotgun proteomics is the principal methodological platform for the state-
of-the-art proteome research. This methodology assumes quantitative isolation of the total …

Critical issues and optimized practices in quantification of protein abundance level to determine interindividual variability in DMET proteins by LC‐MS/MS proteomics

DK Bhatt, B Prasad - Clinical Pharmacology & Therapeutics, 2018 - Wiley Online Library
Protein quantification data on drug metabolizing enzymes and transporters (collectively
referred as DMET proteins) in human tissues are useful in predicting interindividual …

On-capillary alkylation micro-reactor: a facile strategy for proteo-metabolome profiling in the same single cells

Y He, H Yuan, Y Liang, X Liu, X Zhang, Y Ji, B Zhao… - Chemical …, 2023 - pubs.rsc.org
Single-cell multi-omics analysis can provide comprehensive insights to study cell-to-cell
heterogeneity in normal and disease physiology. However, due to the lack of amplification …

Quantitative proteomics identifies brain acid soluble protein 1 (BASP1) as a prognostic biomarker candidate in pancreatic cancer tissue

Q Zhou, R Andersson, D Hu, M Bauden, T Kristl… - …, 2019 - thelancet.com
Background Pancreatic cancer is a heterogenous disease with a poor prognosis. This study
aimed to discover and validate prognostic tissue biomarkers in pancreatic cancer using a …

Cellulose synthase stoichiometry in aspen differs from Arabidopsis and Norway spruce

X Zhang, PG Dominguez, M Kumar, J Bygdell… - Plant …, 2018 - academic.oup.com
Cellulose is synthesized at the plasma membrane by cellulose synthase complexes (CSCs)
containing cellulose synthases (CESAs). Genetic analysis and CESA isoform quantification …