Minimum information about an uncultivated virus genome (MIUViG)
We present an extension of the Minimum Information about any (x) Sequence (MIxS)
standard for reporting sequences of uncultivated virus genomes. Minimum Information about …
standard for reporting sequences of uncultivated virus genomes. Minimum Information about …
Virus taxonomy in the age of metagenomics
The number and diversity of viral sequences that are identified in metagenomic data far
exceeds that of experimentally characterized virus isolates. In a recent workshop, a panel of …
exceeds that of experimentally characterized virus isolates. In a recent workshop, a panel of …
Discovery of several thousand highly diverse circular DNA viruses
MJ Tisza, DV Pastrana, NL Welch, B Stewart, A Peretti… - elife, 2020 - elifesciences.org
Although millions of distinct virus species likely exist, only approximately 9000 are
catalogued in GenBank's RefSeq database. We selectively enriched for the genomes of …
catalogued in GenBank's RefSeq database. We selectively enriched for the genomes of …
Eukaryotic circular rep-encoding single-stranded DNA (CRESS DNA) viruses: ubiquitous viruses with small genomes and a diverse host range
While single-stranded DNA (ssDNA) was once thought to be a relatively rare genomic
architecture for viruses, modern metagenomics sequencing has revealed circular ssDNA …
architecture for viruses, modern metagenomics sequencing has revealed circular ssDNA …
Towards quantitative viromics for both double-stranded and single-stranded DNA viruses
Background Viruses strongly influence microbial population dynamics and ecosystem
functions. However, our ability to quantitatively evaluate those viral impacts is limited to the …
functions. However, our ability to quantitatively evaluate those viral impacts is limited to the …
Sequence-based taxonomic framework for the classification of uncultured single-stranded DNA viruses of the family Genomoviridae
A Varsani, M Krupovic - Virus evolution, 2017 - academic.oup.com
With the advent of metagenomics approaches, a large diversity of known and unknown
viruses has been identified in various types of environmental, plant, and animal samples …
viruses has been identified in various types of environmental, plant, and animal samples …
Pervasive chimerism in the replication-associated proteins of uncultured single-stranded DNA viruses
Numerous metagenomic studies have uncovered a remarkable diversity of circular
replication-associated protein (Rep)-encoding single-stranded (CRESS) DNA viruses, the …
replication-associated protein (Rep)-encoding single-stranded (CRESS) DNA viruses, the …
Naryaviridae, Nenyaviridae, and Vilyaviridae: three new families of single-stranded DNA viruses in the phylum Cressdnaviricota
M Krupovic, A Varsani - Archives of virology, 2022 - Springer
The phylum Cressdnaviricota includes viruses with circular single-stranded DNA (ssDNA)
genomes and icosahedral capsids. These viruses display global environmental distribution …
genomes and icosahedral capsids. These viruses display global environmental distribution …
Viral Metagenomic Analysis of Aedes albopictus Mosquitos from Southern Switzerland
A metagenomic study was performed on 498 female and 40 male Aedes albopictus
mosquitos collected in August and September 2019 in Ticino, a region in southern …
mosquitos collected in August and September 2019 in Ticino, a region in southern …
Metagenomic detection and characterisation of multiple viruses in apparently healthy Australian Neophema birds
S Sarker - Scientific Reports, 2021 - nature.com
Emerging viral pathogens are a significant concern, with potential consequences for human,
animal and environmental health. Over the past several decades, many novel viruses have …
animal and environmental health. Over the past several decades, many novel viruses have …