Realizations of kinetic differential equations
The induced kinetic differential equation of a reaction network endowed with mass action
type kinetics is a system of polynomial differential equations. The problem studied here is …
type kinetics is a system of polynomial differential equations. The problem studied here is …
Weakly reversible single linkage class realizations of polynomial dynamical systems: an algorithmic perspective
Abstract Systems of differential equations with polynomial right-hand sides are very common
in applications. In particular, when restricted to the positive orthant, they appear naturally …
in applications. In particular, when restricted to the positive orthant, they appear naturally …
The effect of characteristic times on collective modes of two quorum sensing coupled identical ring oscillators
E Volkov, EH Hellen - Chaos, Solitons & Fractals, 2021 - Elsevier
There has long been interest in methods to achieve variability of collective modes in systems
of coupled identical oscillators. Extensive multistability and a dynamically rich parameter …
of coupled identical oscillators. Extensive multistability and a dynamically rich parameter …
Two nested limit cycles in two-species reactions
We search for limit cycles in the dynamical model of two-species chemical reactions that
contain seven reaction rate coefficients as parameters and at least one third-order reaction …
contain seven reaction rate coefficients as parameters and at least one third-order reaction …
Condition for sustained oscillations in repressilator based on a hybrid modeling of gene regulatory networks
H Sun, JP Comet, M Folschette… - … on Bioinformatics Models …, 2023 - hal.science
In this work, we study the existence of sustained oscillations in the" canonical" repressilator,
a basic synthetic circuit of 3 genes leading to sustained oscillations. Previous works mostly …
a basic synthetic circuit of 3 genes leading to sustained oscillations. Previous works mostly …
Synchronization of fractional-order repressilatory genetic oscillators with time delay
Q Lu, W Lu, Y Zhang - International Journal of Modeling, Simulation …, 2024 - World Scientific
Genetic oscillators have been widely used in modeling key processes of biological systems,
especially cell cycles and circadian rhythms. In particular, repressilatory genetic oscillators …
especially cell cycles and circadian rhythms. In particular, repressilatory genetic oscillators …
Identifying and Analyzing Long-term Dynamical Behaviors of Gene Regulatory Networks with Hybrid Modeling
H Sun - 2023 - theses.hal.science
Using dynamical models to reveal dynamical properties of gene regulatory networks can
help us better understand the nature of these biological systems and develop new medical …
help us better understand the nature of these biological systems and develop new medical …
Global exponential stability of delayed coupled repressilators in artificial oscillatory networks
Z Liu, X Zhang, X Wang - 2019 IEEE 58th Conference on …, 2019 - ieeexplore.ieee.org
As one of the important artificial oscillatory networks, repressilators have attracted many
attentions due to its function of synthesizing oscillations at the cellular level. In this paper, the …
attentions due to its function of synthesizing oscillations at the cellular level. In this paper, the …
Controlling the Synchronization of Molecular Oscillators through Indirect Coupling
S Inagaki, N Aubert-Kato - Micromachines, 2022 - mdpi.com
In this article, we study the coupling of a collection of molecular oscillators, called
repressilators, interacting indirectly through enzymatic saturation. We extended a measure …
repressilators, interacting indirectly through enzymatic saturation. We extended a measure …
[PDF][PDF] Abstraction-Based Analysis of Continuous-Time Models in Systems Biology
J Dražanová - is.muni.cz
This thesis deals with several abstractions that create a discrete transition system from an
input continuous-time system with dynamics given by a system of autonomous ODE that are …
input continuous-time system with dynamics given by a system of autonomous ODE that are …