[HTML][HTML] Proteingym: Large-scale benchmarks for protein design and fitness prediction
Predicting the effects of mutations in proteins is critical to many applications, from
understanding genetic disease to designing novel proteins that can address our most …
understanding genetic disease to designing novel proteins that can address our most …
Decoding human genetic variation using a synthetic paradigm
AH Kachroo - Nature Reviews Genetics, 2024 - nature.com
Decoding human genetic variation using a synthetic paradigm | Nature Reviews Genetics Skip to
main content Thank you for visiting nature.com. You are using a browser version with limited …
main content Thank you for visiting nature.com. You are using a browser version with limited …
Variant effect predictor correlation with functional assays is reflective of clinical classification performance
BJ Livesey, JA Marsh - bioRxiv, 2024 - biorxiv.org
Understanding the relationship between protein sequence and function is crucial for
accurate genetic variant classification. Variant effect predictors (VEPs) play a vital role in …
accurate genetic variant classification. Variant effect predictors (VEPs) play a vital role in …
High-resolution functional mapping of RAD51C by saturation genome editing
Pathogenic variants in RAD51C confer an elevated risk of breast and ovarian cancer, while
individuals homozygous for specific RAD51C alleles may develop Fanconi anemia. Using …
individuals homozygous for specific RAD51C alleles may develop Fanconi anemia. Using …
Saturation mutagenesis-reinforced functional assays for disease-related genes
Interpretation of disease-causing genetic variants remains a challenge in human genetics.
Current costs and complexity of deep mutational scanning methods are obstacles for …
Current costs and complexity of deep mutational scanning methods are obstacles for …
Assessing predictions on fitness effects of missense variants in HMBS in CAGI6
This paper presents an evaluation of predictions submitted for the" HMBS" challenge, a
component of the sixth round of the Critical Assessment of Genome Interpretation held in …
component of the sixth round of the Critical Assessment of Genome Interpretation held in …
FiTMuSiC: leveraging structural and (co) evolutionary data for protein fitness prediction
Systematically predicting the effects of mutations on protein fitness is essential for the
understanding of genetic diseases. Indeed, predictions complement experimental efforts in …
understanding of genetic diseases. Indeed, predictions complement experimental efforts in …
Large language models for biological prediction and design
AW Kollasch - 2023 - search.proquest.com
Predicting the functional impact of changes to biological sequences is a central challenge in
genetics and biology. Beyond genetics, sequence-to-function mapping has key applications …
genetics and biology. Beyond genetics, sequence-to-function mapping has key applications …
[HTML][HTML] A probabilistic graphical model for estimating selection coefficient of missense variants from human population sequence data
Accurately predicting the effect of missense variants is a central problem in interpretation of
genomic variation. Commonly used computational methods does not capture the …
genomic variation. Commonly used computational methods does not capture the …
A missense variant effect map for the human tumour suppressor protein CHK2
M Gebbia, DI Zimmerman, R Jiang, M Nguyen, J Weile… - bioRxiv, 2024 - biorxiv.org
The tumour suppressor CHEK2 encodes the serine/threonine protein kinase CHK2 which,
upon DNA damage, is important for pausing the cell cycle, initiating DNA repair and …
upon DNA damage, is important for pausing the cell cycle, initiating DNA repair and …